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| Resource Name | Proper Citation | Abbreviations | Resource Type |
Description |
Keywords | Resource Relationships | ||||||||||||||
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RNA Abundance Database Resource Report Resource Website 1+ mentions |
RNA Abundance Database (RRID:SCR_002771) | RAD | data or information resource, data repository, database, resource, service resource, storage service resource | THIS RESOURCE IS NO LONGER IN SERVICE, Documented on March 24, 2014. A resource for gene expression studies, storing highly curated MIAME-compliant studies (i.e. experiments) employing a variety of technologies such as filter arrays, 2-channel microarrays, Affymetrix chips, SAGE, MPSS and RT-PCR. Data were available for querying and downloading based on the MGED ontology, publications or genes. Both public and private studies (the latter viewable only by users having appropriate logins and permissions) were available from this website. Specific details on protocols, biomaterials, study designs, etc., are collected through a user-friendly suite of web annotation forms. Software has been developed to generate MAGE-ML documents to enable easy export of studies stored in RAD to any other database accepting data in this format. RAD is part of a more general Genomics Unified Schema (http://gusdb.org), which includes a richly annotated gene index (http://allgenes.org), thus providing a platform that integrates genomic and transcriptomic data from multiple organisms. NOTE: Due to changes in technology and funding, the RAD website is no longer available. RAD as a schema is still very much active and incorporated in the GUS (Genomics Unified Schema) database system used by CBIL (EuPathDB, Beta Cell Genomics) and others. The schema for RAD can be viewed along with the other GUS namespaces through our Schema Browser. | gene expression, gene, affymetrix, biomaterial, genomics, microarray, mpss, ontology, rna, rt-pcr, sage, functional genomics, transcript abundance |
is listed by: OMICtools is related to: MIAME is related to: MGED Ontology is related to: MicroArray and Gene Expression Markup Language has parent organization: University of Pennsylvania; Philadelphia; USA |
NIH ; NHGRI RO1-HG-01539; NIDDK U01DK56947; NHGRI K25-HG-02296; NHGRI K25-HG-00052 |
THIS RESOURCE IS NO LONGER IN SERVICE | OMICS_00869, nif-0000-00133, r3d100000017 | https://doi.org/10.17616/R3QP4Q | SCR_002771 | SciCrunch Registry | RNA Abundance Database | 2026-09-26 02:13:17 | 4 | |||||
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Wasserman Lab Online Software Tools Resource Report Resource Website 1+ mentions |
Wasserman Lab Online Software Tools (RRID:SCR_002892) | software library, software resource, software toolkit | This portal leads to the numerous Wasserman Lab online software tools available for use. The following are list of active Software tools available: - ConSite: Transcription factor binding site detection using phylogenetic footprinting - dbMTN: Multiple Tissue Northern Blot Comparison Tool - Gene Set Builder: A tool for collation, curation and distribution of sets of genes - The Gene Characterization Index: a bioinformatics method for scoring the extent to which a protein-encoding gene is functionally described - JASPAR: Transcription Factor Binding Profile Database - MSCAN: Algorithm that detects clusters of transcription factor binding sites in genomic sequences - NHRscan: A computational predictor of nuclear hormone receptor binding sites - oPOSSUM: Web-based analysis of over-represented transcription factor binding sites - ORCA: Transcription factor binding site detection using phylogenetic footprinting (alternative to ConSite) - OrthoSeq: Alignment of DNA sequences - PAZAR: An open-access system for the collection and dissemination of regulatory sequence annotation - Phylofoot: Tools for phylogenetic footprinting - RAVEN: Regulatory analysis of Variation in ENhancers - SAGE2Splice: A tool that uses unmapped SAGE tags to predict novel splice junctions in the genome - TFBS: Perl modules for transcription factor binding site detection and analysis - TFCat: TFCat is a catalog of mouse and human TFs based on a reliable core collection of annotations obtained by expert review of the scientific literature. - TFe: An online encyclopedic collection of well-studied transcription factor proteins in the human, mouse, and rat genomes - Ulysses: Protein Interactions Conserved Across Evolution | lab, library, online, software, tool | THIS RESOURCE IS NO LONGER IN SERVICE | nif-0000-25613 | SCR_002892 | SciCrunch Registry | Wasserman Software | 2026-09-26 02:13:19 | 9 | |||||||||
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New Science of Addiction: Genetics and the Brain Resource Report Resource Website 1+ mentions |
New Science of Addiction: Genetics and the Brain (RRID:SCR_002770) | New Science of Addiction | data or information resource, disease-related portal, narrative resource, portal, topical portal, training material | A physiologic and molecular look at drug addiction involving many factors including: basic neurobiology, a scientific examination of drug action in the brain, the role of genetics in addiction, and ethical considerations. Designed to be used by students, teachers and members of the public, the materials meet selected US education standards for science and health. Drug addiction is a chronic disease characterized by changes in the brain which result in a compulsive desire to use a drug. A combination of many factors including genetics, environment and behavior influence a person's addiction risk, making it an incredibly complicated disease. The new science of addiction considers all of these factors - from biology to family - to unravel the complexities of the addicted brain. * Natural Reward Pathways Exist in the Brain: The reward pathway is responsible for driving our feelings of motivation, reward and behavior. * Drugs Alter the Brain's Reward Pathway: Drugs work over time to change the reward pathway and affect the entire brain, resulting in addiction. * Genetics Is An Important Factor In Addiction: Genetic susceptibility to addiction is the result of the interaction of many genes. * Timing and Circumstances Influence Addiction: If you use drugs when you are an adolescent, you are more likely to develop lifetime addiction. An individual's social environment also influences addiction risk. * Challenges and Issues in Addiction: Addiction impacts society with many ethical, legal and social issues. | drug abuse, drug delivery, drug, drug of abuse, environmental risk factor, genetic factor, genetics, addiction, gene, treatment, brain, brain circuit, pathway, human, lesson plan, neuron, reward pathway, spanish, teacher, chronic disease | has parent organization: University of Utah Genetic Science Learning Center - Learn Genetics | Substance-Related Disorder | NIDA 1 R25 DA 15461 | Free | nif-0000-00430 | SCR_002770 | SciCrunch Registry | 2026-09-26 02:13:17 | 3 | ||||||
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GenScript Resource Report Resource Website 5000+ mentions |
GenScript (RRID:SCR_002891) | commercial organization | Commercial organization which provides life science services and products to researchers. They specialize in gene synthesis, peptide, protein, antibody and preclinical drug development service. | gene synthesis service, drug development, reagent provider | nlx_152374 | http://www.dddmag.com/company-profiles/genscript-usa-inc | SCR_002891 | SciCrunch Registry | GenScript USA, GenScript USA Inc | 2026-09-26 02:13:18 | 7134 | |||||||||
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GeneDB Resource Report Resource Website 100+ mentions |
GeneDB (RRID:SCR_002774) | GDB, GeneDB | data or information resource, data set, database, training resource, workshop | Database of genomes at various stages of completion, from early access to partial genomes with automatic annotation through to complete genomes with extensive manual curation. Its primary goals are: 1) to provide reliable access to the latest sequence data and annotation/curation for the whole range of organisms sequenced by the Pathogen group, and 2) to develop the website and other tools to aid the community in accessing and obtaining the maximum value from these data. | schizosaccharomyces, pombe, leishmania, major, trypanosoma, brucei, functional, genomics, proteomics, apicomplexan, protozoa, kinetoplastid, parasitic, helminths, bacteria, parasite vector, virus, FASEB list |
is related to: TriTrypDB is related to: Integrated Manually Extracted Annotation has parent organization: Wellcome Trust Sanger Institute; Hinxton; United Kingdom is parent organization of: GeneDB Gmorsitans is parent organization of: GeneDB Lmajor is parent organization of: GeneDB Tbrucei is parent organization of: GeneDB Pfalciparum is parent organization of: GeneDB Spombe |
Wellcome Trust | PMID:14681429 | Free | nif-0000-02880, r3d100010626 | https://doi.org/10.17616/R31C8X | http://old.genedb.org/, http://www.gdb.org/ | SCR_002774 | SciCrunch Registry | GDB, Gene DB | 2026-09-26 02:13:17 | 430 | |||
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La Jolla Interdisciplinary Neurosciences Center Resource Report Resource Website |
La Jolla Interdisciplinary Neurosciences Center (RRID:SCR_002772) | La Jolla Neuroscience Center Cores | access service resource, analysis service resource, biomaterial analysis service, material analysis service, material service resource, production service resource, service resource | Our NINDS Center Core Grant supports centralized resources and facilities shared by investigators with existing NINDS-funded research projects. Our Center is composed of three research cores, each of which will enrich the effectiveness of ongoing research, and promote new research directions. The three Core facilities support Electrophysiology, Neuropathology / Histology, and High-Throughput/High-Content Chemical and Genomic Library screening. By making these important Core Services available to the local Neuroscience community, the La Jolla Neurosciences Program hopes to promote the study of how the nervous system works and develop treatments for nervous system diseases. The cores and their services are available to La Jolla neuroscientists. Core services are available to NINDS-supported neuroscience projects from local investigators as well as young neuroscientists prior to obtaining their first NIH-funded grant. * Electrophysiology: SBMRI Electrophysiology ** The Electrophysiology Core consists of the Sanford-Burnham Electrophysiology Facility. This facility can perform patch-clamp intracellular and extracellular field recordings on a range of material including cultured cells and brain slices. The Sanford-Burnham facility emphasizes electrophysiological analysis of cultured cells and the detailed electrical properties of channels, receptors and recombinant proteins expressed in Xenopus oocytes or mammalian cells. * Neuropathology: UCSD Neuropathology ** The Neuropathology laboratory applies immunocytochemistry, neurochemistry, molecular genetics, transgenic models of disease, and imaging by scanning laser confocal microscopy to analysis of neurological disease in animal models. * Chemical Library Screening: SBIMR Assay Development, SBIMR Chemical Library Screening, SBIMR Cheminformatics, SBIMR High-content Screening ** The Chemical Library Screening core offers high-throughput screening (HTS) of biochemical and cell-based array using traditional HTS readouts and automated microscopy for high-content screening (HCS)> These facilities also offer array development and screening, as well as cheminformatics and medicinal chemistry., THIS RESOURCE IS NO LONGER IN SERVICE. Documented on January 15,2026. | neuroscience, nervous system, electrophysiology, neuropathology, histology, high-throughput screening, high-content screening, chemical, genomic, chemical library screening, cheminformatics, medicinal chemistry |
has parent organization: University of California at San Diego; California; USA has parent organization: Sanford Burnham Prebys Medical Discovery Institute |
Nervous system disease | NINDS ; NIH Blueprint for Neuroscience Research |
THIS RESOURCE IS NO LONGER IN SERVICE | nif-0000-00436 | SCR_002772 | SciCrunch Registry | La Jolla Interdisciplinary Neuroscience Center Core (Burnham-Salk-Scripps-UCSD) | 2026-09-26 02:13:17 | 0 | |||||
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National Gnotobiotic Rodent Resource Center Resource Report Resource Website 10+ mentions |
National Gnotobiotic Rodent Resource Center (RRID:SCR_002768) | biomaterial supply resource, material resource, organism supplier | Material resource that provides germ-free and selectively colonized rodents to requesting investigators. Germ-free rodents are axenic, with no detectible bacteria, yeast, molds, parasites or viruses (except retroviruses). | embryo, axenic, bacteria, germ, mold, mouse, parasite, rat, retrovirus, rodent, specie, strain, virus, yeast | has parent organization: University of North Carolina at Chapel Hill; North Carolina; USA | NIH Office of the Director P40 OD010995 | Free | nif-0000-24375 | SCR_002768 | SciCrunch Registry | NGRRC | 2026-09-26 02:13:17 | 12 | |||||||
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Macaque.org Resource Report Resource Website 1+ mentions |
Macaque.org (RRID:SCR_002767) | Macaque.org | data or information resource, disease-related portal, laboratory portal, organization portal, portal, research forum portal, topical portal | THIS RESOURCE IS NO LONGER IN SERVICE, documented May 10, 2017. A pilot effort that has developed a centralized, web-based biospecimen locator that presents biospecimens collected and stored at participating Arizona hospitals and biospecimen banks, which are available for acquisition and use by researchers. Researchers may use this site to browse, search and request biospecimens to use in qualified studies. The development of the ABL was guided by the Arizona Biospecimen Consortium (ABC), a consortium of hospitals and medical centers in the Phoenix area, and is now being piloted by this Consortium under the direction of ABRC. You may browse by type (cells, fluid, molecular, tissue) or disease. Common data elements decided by the ABC Standards Committee, based on data elements on the National Cancer Institute''s (NCI''s) Common Biorepository Model (CBM), are displayed. These describe the minimum set of data elements that the NCI determined were most important for a researcher to see about a biospecimen. The ABL currently does not display information on whether or not clinical data is available to accompany the biospecimens. However, a requester has the ability to solicit clinical data in the request. Once a request is approved, the biospecimen provider will contact the requester to discuss the request (and the requester''s questions) before finalizing the invoice and shipment. The ABL is available to the public to browse. In order to request biospecimens from the ABL, the researcher will be required to submit the requested required information. Upon submission of the information, shipment of the requested biospecimen(s) will be dependent on the scientific and institutional review approval. Account required. Registration is open to everyone.. Documented on June 8, 2020.Macaque genomic and proteomic resources and how they are providing important new dimensions to research using macaque models of infectious disease. The research encompasses a number of viruses that pose global threats to human health, including influenza, HIV, and SARS-associated coronavirus. By combining macaque infection models with gene expression and protein abundance profiling, they are uncovering exciting new insights into the multitude of molecular and cellular events that occur in response to virus infection. A better understanding of these events may provide the basis for innovative antiviral therapies and improvements to vaccine development strategies. | genomic, hiv, infection, proteomic, virus, simian immunodeficiency virus, influenza virus, animal model | has parent organization: University of Washington; Seattle; USA | Viral infection, Infectious disease | NCRR ; NIAID ; NHLBI ; NIDA |
THIS RESOURCE IS NO LONGER IN SERVICE | nif-0000-24370 | SCR_002767 | SciCrunch Registry | Macaque.org | 2026-09-26 02:13:17 | 3 | |||||
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ConTrack Resource Report Resource Website 10+ mentions |
ConTrack (RRID:SCR_002681) | ConTrack | data processing software, image processing software, software application, software resource | An algorithm for identifying pathways that are known to exist between two regions within DTI data of anisotropic tissue, e.g., muscle, brain, spinal cord. The ConTrack algorithms use knowledge of DTI scanning physics and apriori information about tissue architecture to identify the location of connections between two regions within the DTI data. Assuming a course of connection or pathway between these two regions is known to exist within the measured tissue, ConTrack can be used to estimate properties of these connections in-vivo. | diffusion tensor imaging, tractography, brain connectivity, mri, software, source code, pathway, fiber tractography, tissue analysis |
is listed by: Biositemaps has parent organization: Simtk.org |
NIH Roadmap for Medical Research ; NIGMS U54 GM072970; NEI EY015000 |
PMID:18831651 | Free, Available for download, Freely available | nif-0000-23303 | SCR_002681 | SciCrunch Registry | Connectivity Tracking, Connectivity Tracking (ConTrack) | 2026-09-26 02:13:15 | 13 | |||||
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sapFinder Resource Report Resource Website |
sapFinder (RRID:SCR_002685) | software resource | An R software package, for detection of the variant peptides based on tandem mass spectrometry (MS/MS)-based proteomics data. It automates (1) variation-associated database construction, (2) database searching, (3) post-processing, (4) HTML-based report generation in shotgun proteomics. | standalone software, r, mass spectrometry, proteomics, rna-seq, report writing, snp, visualization, bio.tools |
is listed by: OMICtools is listed by: bio.tools is listed by: Debian has parent organization: Bioconductor |
PMID:25053745 | Free, Available for download, Freely available | biotools:sapfinder, OMICS_05285 | https://bio.tools/sapfinder | SCR_002685 | SciCrunch Registry | sapFinder - A package for variant peptides detection and visualization in shotgun proteomics. | 2026-09-26 02:13:15 | 0 | ||||||
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Simbody(tm): SimTK Multibody Dynamics Toolset Resource Report Resource Website 1+ mentions |
Simbody(tm): SimTK Multibody Dynamics Toolset (RRID:SCR_002684) | simulation software, software application, software resource | This project is a SimTK Core toolset providing general multibody dynamics capability, i.e., the capability to solve Newton's 2nd law F=ma in any set of coordinates. The techniques of rigid body mechanics are used to provide results in Order(n) time for any set of n coordinates. This can be used for internal coordinate modeling of molecules, or for coarse-grained models based on larger chunks. It is also useful for large-scale mechanical models, such as neuromuscular models of human gait. Simbody is provided as an open source, object-oriented C++ API and delivers high-performance, accuracy-controlled science/engineering-quality results. Binaries of this software are bundled with other SimTK Core modules. | articulated body, coarse-grained molecule modeling, constrained motion, internal coordinates, mechanical simulation, mechanics, molecular dynamics, multibody dynamics, rigid body, simtk core, skeletal mechanics, torsion coordinates |
is used by: CPODES numerical integrator is related to: Simtk.org |
PMID:25866705 | Free, Available for download, Freely available | nif-0000-23309 | SCR_002684 | SciCrunch Registry | Simbody | 2026-09-26 02:13:15 | 1 | |||||||
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Cognitive Atlas Resource Report Resource Website 10+ mentions |
Cognitive Atlas (RRID:SCR_002793) | Cognitive Atlas | controlled vocabulary, data or information resource, ontology | Knowledge base (or ontology) that characterizes the state of current thought in cognitive science that captures knowledge from users with expertise in psychology, cognitive science, and neuroscience. There are two basic kinds of knowledge in the knowledge base. Terms provide definitions and properties for individual concepts and tasks. Assertions describe relations between terms in the same way that a sentence describes relations between parts of speech. The goal is to develop a knowledge base that will support annotation of data in databases, as well as supporting improved discourse in the community. It is open to all interested researchers. A fundamental feature of the knowledge base is the desire and ability to capture not just agreement but also disagreement regarding definitions and assertions. Thus, if you see a definition or assertion that you disagree with, then you can assert and describe your disagreement. The project is led by Russell Poldrack, Professor of Psychology and Neurobiology at the University of Texas at Austin in collaboration with the UCLA Center for Computational Biology (A. Toga, PI) and UCLA Consortium for Neuropsychiatric Phenomics (R. Bilder, PI). Most tasks used in cognitive psychology research are not identical across different laboratories or even within the same laboratory over time. A major advantage of anchoring cognitive ontologies to the measurement level is that the strategy for determining changes in task properties is easier than tracking changes in concept definitions and usage. The process is easier because task parameters are usually (if not always) operationalized objectively, offering a clear basis to judge divergence in methods. The process is also easier because most tasks are based on prior tasks, and thus can more readily be considered descendants in a phylogenetic sense. | cognitive function, cognitive phenotype, cognitive process, cognitive science, cognitive state, human, cognitive ontology, cognitive task, experimental task, mental construct, concept, task, eeg, meg, electrocorticography, magnetic resonance, ontology, pet, spect, knowledge environment |
is listed by: NeuroImaging Tools and Resources Collaboratory (NITRC) is related to: Speech Perception is related to: Brainspell has parent organization: University of Texas at Austin; Texas; USA is parent organization of: Cognitive Atlas Ontology |
NIMH RO1MH082795 | PMID:21922006 PMID:19634038 |
Free, Freely Available | nif-0000-24591 | http://www.nitrc.org/projects/cogatlas | SCR_002793 | SciCrunch Registry | cognitive atlas - a collaboratively developed cognitive science ontology | 2026-09-26 02:13:17 | 38 | ||||
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Diseasome Resource Report Resource Website 1+ mentions |
Diseasome (RRID:SCR_002792) | Diseasome | book, data or information resource, data set, image, map, narrative resource, service resource | A disease / disorder relationships explorer and a sample of a map-oriented scientific work. It uses the Human Disease Network dataset and allows intuitive knowledge discovery by mapping its complexity. The Human Disease Network (official) dataset, a poster of the data and related book (Biology - The digital era, ISBN: 978-2-271-06779-1) are available. This kind of data has a network-like organization, and relations between elements are at least as important as the elements themselves. More data could be integrated to this prototype and could eventually bring closer phenotype and genotype. Results should be visual, but also printable. Creating posters can enhance collaborative work. It facilitates discussion and sharing of ideas about the data. This website initiative is an invitation to think about the benefits of networks exploration but above all it tries to outline future designs of scientific information systems. | disease, disorder, genotype, phenotype, poster, network |
is related to: Allen Institute Neurowiki has parent organization: Gephi |
Dana-Farber Cancer Institute ; W. M. Keck Foundation ; NHGRI ; NIGMS |
PMID:17502601 | Free, Freely Available | nif-0000-24580 | SCR_002792 | SciCrunch Registry | Diseaseome | 2026-09-26 02:13:17 | 1 | |||||
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ANDES Resource Report Resource Website 10+ mentions |
ANDES (RRID:SCR_002791) | data analysis software, data processing software, software application, software resource, software toolkit | Software library and a suite of applications, written in Perl and R, for deep sequencing statistical analyses. | deep sequencing, biomarker detection, statistical analysis, bio.tools |
is listed by: OMICtools is listed by: bio.tools is listed by: Debian has parent organization: SourceForge |
PMID:20633290 | Free, Freely available, Available for download | biotools:andes, OMICS_01119 | https://bio.tools/andes | SCR_002791 | SciCrunch Registry | Statistical tools for the Analyses of Deep Sequencing (ANDES), Statistical tools for the Analyses of Deep Sequencing, Statistical tools for the ANalyses of Deep Sequencing | 2026-09-26 02:13:17 | 26 | ||||||
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BLOCK-iT RNAi Designer Resource Report Resource Website 10+ mentions |
BLOCK-iT RNAi Designer (RRID:SCR_002794) | BLOCK-iT RNAi Designer | analysis service resource, commercial organization, data analysis service, production service resource, service resource | A free tool to design effective RNAi molecules that includes the following target design options: Stealth RNAi siRNA, siRNA, miR RNAi, shRNA, siRNA to Stealth RNAi siRNA, and siRNA to shRNA. | rnai, design, sirna, blast, molecule, rnai design | has parent organization: Life Technologies | Free, Freely Available | rid_000099 | SCR_002794 | SciCrunch Registry | 2026-09-26 02:13:17 | 10 | ||||||||
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Dana Foundation Resource Report Resource Website 10+ mentions |
Dana Foundation (RRID:SCR_002789) | blog, book, data or information resource, funding resource, journal article, narrative resource, outreach program, podcast, service resource, training material, training resource, training service resource | A private philanthropy with principal interests in brain science, immunology, and education. The portal provides general information about the brain and current brain research, links to validated sites related brain disorders, education resources and lesson plans, and support for the training of in-school arts specialists. The Dana Foundation science and health grants support brain research in neuroscience and immunology and their interrelationship in human health and disease. The grant sections include brain and immuno-imaging, clinical neuroscience research, human immunology and neuroimmunology. The Foundation also occasionally sponsors workshops and forums for working scientists, as well as offering funding for selected young researchers to continue their education or to attend seminars and workshops elsewhere. | education, foundation, funding resource, human brain, clinical, development, disease, disorder, grant, neruroimmunology, neuroethics, neuroscience, philanthropy, podcast, research | is parent organization of: Dana Foundation: BrainWeb | Free | nif-0000-24463 | SCR_002789 | SciCrunch Registry | The Dana Foundation | 2026-09-26 02:13:17 | 23 | ||||||||
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University of Basel; Basel; Switzerland Resource Report Resource Website 1+ mentions |
University of Basel; Basel; Switzerland (RRID:SCR_002699) | university | Public university in Basel, Switzerland that offers degree programs in theology, law, medicine, humanities and social sciences, science, psychology, and business and economics. | public university, switzerland, degree program |
is related to: EU-AIMS is related to: Bsoft is parent organization of: DogMap is parent organization of: PredictHaplo is parent organization of: TSSer is parent organization of: Ashbya Genome Database is parent organization of: DINO is parent organization of: CLIPZ is parent organization of: SWISS-MODEL Repository is parent organization of: SWISS-MODEL is parent organization of: 4 Port Nose Poke |
Free | nlx_24036 | SCR_002699 | SciCrunch Registry | University of Basel, Universitat Basel | 2026-09-26 02:13:16 | 3 | ||||||||
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FlyMine Resource Report Resource Website 100+ mentions |
FlyMine (RRID:SCR_002694) | FlyMine | data or information resource, database | THIS RESOURCE IS NO LONGER IN SERVICE. Documented on January 14,2026. Integrated database of genomic, expression and protein data for Drosophila, Anopheles, C. elegans and other organisms. You can run flexible queries, export results and analyze lists of data. FlyMine presents data in categories, with each providing information on a particular type of data (for example Gene Expression or Protein Interactions). Template queries, as well as the QueryBuilder itself, allow you to perform searches that span data from more than one category. Advanced users can use a flexible query interface to construct their own data mining queries across the multiple integrated data sources, to modify existing template queries or to create your own template queries. Access our FlyMine data via our Application Programming Interface (API). We provide client libraries in the following languages: Perl, Python, Ruby and & Java API | anopheles, genome, c. elegans, drosophila, gene, chromosomal location, genomics, proteomics, gene expression, interaction, homology, function, regulation, protein, phenotype, pathway, disease, publication, FASEB list |
is related to: FlyBase is related to: UniProt is related to: Ensembl is related to: InterPro is related to: Biological General Repository for Interaction Datasets (BioGRID) is related to: Research Collaboratory for Structural Bioinformatics Protein Data Bank (RCSB PDB) is related to: Tree families database is related to: IntAct is related to: Gene Ontology is related to: GOA is related to: ArrayExpress is related to: REDfly Regulatory Element Database for Drosophilia is related to: KEGG is related to: Reactome has parent organization: University of Cambridge; Cambridge; United Kingdom |
Wellcome Trust 067205; NHGRI |
PMID:17615057 | THIS RESOURCE IS NO LONGER IN SERVICE | nif-0000-02845 | SCR_002694 | SciCrunch Registry | 2026-09-26 02:13:15 | 107 | ||||||
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Wolfram Alpha Computational Knowledge Engine Resource Report Resource Website 10+ mentions |
Wolfram Alpha Computational Knowledge Engine (RRID:SCR_002693) | data or information resource, database, knowledge environment, software application, software resource | Wolfram Alpha is a computational knowledge engine that to make all systematic knowledge computable. Although, this is not a specific neuroscience related resource, the computational and math element will be helpful. Wolfram Alpha's long-term goal is to make all systematic knowledge immediately computable and accessible to everyone. It aims to collect and curate all objective data; implement every known model, method, and algorithm; and make it possible to compute whatever can be computed about anything. It's goal is to build on the achievements of science and other systematizations of knowledge to provide a single source that can be relied on by everyone for definitive answers to factual queries. Wolfram Alpha aims to also bring expert-level knowledge and capabilities to the broadest possible range of peoplespanning all professions and education levels. It's goal is to accept completely free-form input, and to serve as a knowledge engine that generates powerful results and presents them with maximum clarity. Lastly, Wolfram Alpha is an ambitious, long-term intellectual endeavor that it intends to deliver increasing capabilities over the years and decades to come. With a world-class team and participation from top outside experts in countless fields, it's goal is to create something that will stand as a major milestone of 21st century intellectual achievement. As of now, Wolfram Alpha contains 10+ trillion pieces of data, 50,000+ types of algorithms and models, and linguistic capabilities for 1000+ domains. Built with Mathematicawhich is itself the result of more than 20 years of development at Wolfram ResearchWolfram Alpha's core code base now exceeds 5 million lines of symbolic Mathematica code. Running on supercomputer-class compute clusters, Wolfram Alpha makes extensive use of the latest generation of web and parallel computing technologies, including webMathematica and gridMathematica. Its knowledge base and capabilities already span a great many domains, and its underlying framework has the power and flexibility to support ready extension to essentially any domain that is based on systematic knowledge. | element, algorithm, computational, domain, knowledge, math, method, model, neuroscience, systematic, systematization, technology | Free, Freely available | nif-0000-24917 | SCR_002693 | SciCrunch Registry | Wolfram Alpha | 2026-09-26 02:13:15 | 35 | |||||||||
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CTF Resource Report Resource Website 1+ mentions |
CTF (RRID:SCR_002692) | data analysis software, data processing software, sequence analysis software, software application, software resource | Conditional random field (CRF) based transcription factor binding site (TFBS) finding system. The underlying CRF model can integrate features of different sources. | conditional random field, transcription factor binding site, finding system, find transcription factor binding site |
is listed by: OMICtools has parent organization: Shanghai Jiao Tong University; Shanghai; China |
Free, Available for download, Freely available | OMICS_00480 | SCR_002692 | SciCrunch Registry | 2026-09-26 02:13:15 | 1 |
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The NIDDK Information Network (dkNET) serves the needs of basic and clinical investigators by providing seamless access to large pools of data and research resources relevant to the mission of The National Institute of Diabetes Digestive and Kidney Diseases (NIDDK). dkNET is hosted at University of California San Diego, and is supported by NIH NIDDK grant U24DK097771.
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