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SciCrunch Registry is a curated repository of scientific resources, with a focus on biomedical resources, including tools, databases, and core facilities - visit SciCrunch to register your resource.

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Resource Name Proper Citation Abbreviations Resource Type Description Keywords Resource Relationships Related Condition Funding Defining Citation Availability Specification URL Alternate IDs Alternate URLs Old URLs Parent Organization Resource ID Authority Synonyms Record Last Update Mentions Count
PRiED
 
Resource Report
Resource Website
PRiED (RRID:SCR_021586) data or information resource, instrument resource, portal, project portal Portal provides open Source 3-D Printed Modular micro drive system for acute primate neurophysiology. Instrument, 3D Printed Modular micro drive system, acute primate neurophysiology, OpenBehavior is listed by: OpenBehavior
has parent organization: Boston University School of Medicine; Massachusetts; USA
DOI:10.1371/journal.pone.0094262 Free, Freely available SCR_021586 SciCrunch Registry 2026-10-24 12:48:56 0
Modular Automated Platform for Large Scale Experiments project
 
Resource Report
Resource Website
10+ mentions
Modular Automated Platform for Large Scale Experiments project (RRID:SCR_021557) MAPLE data or information resource, instrument resource, portal, project portal Portal related to measurement of fly social networks and behavior. Provides Drosophila handing robot that boasts modular design, allowing platform to both automate diverse phenotyping assays and aid with lab chores (e.g., collecting virgin female flies). MAPLE permits small part manipulator, USB digital camera, and fly manipulator to work simultaneously over platform of flies. Instrument, Drosophila handing robot, automate diverse phenotyping assays, collecting virgin female flies, USB digital camera, fly manipulator, flies modular automated platform, large scale experiments, OpenBehavior is listed by: OpenBehavior
is related to: Modular Automated Platform for Large Scale Experiments
DOI:10.1101/239459 Free, Freely available SCR_021557 SciCrunch Registry Modular Automated Platform for Large -Scale Experiments 2026-10-24 12:48:55 49
ArControl project
 
Resource Report
Resource Website
ArControl project (RRID:SCR_021556) data or information resource, instrument resource, portal, project portal Portal related to delivering stimuli and monitoring responses. Provided behavioral platform was developed by scientists from Huazhong University of Science and Technology, Wuhan, China. System uses Arduino UNO board and simple drive circuit along with stand-along GUI application. Experimental data is automatically recorded with built-in data acquisition function and entire behavioral schedule is stored within Arduino chip. Instrument, behavioral platform, delivering stimuli, monitoring responses, OpenBehavior is listed by: OpenBehavior
is related to: ArControl
DOI:10.3389/fnbeh.2017.00244 Free, Freely available SCR_021556 SciCrunch Registry ArtControl, Arduino Control Platform 2026-10-24 12:48:59 0
SnackClock
 
Resource Report
Resource Website
SnackClock (RRID:SCR_021554) data or information resource, instrument resource, portal, project portal Project related to feeding behavior.Provides device for dispensing pre-measured quantities of food at regular intervals throughout day. Device uses 24 hour clock movement to rotate dispenser wheel one revolution per day. Instrument, feeding behavior, dispensing pre-measured food quantities device, regular interval feeding, OpenBehavior is listed by: OpenBehavior
has parent organization: Washington University in St. Louis; Missouri; USA
Free, Freely available SCR_021554 SciCrunch Registry 2026-10-24 12:48:55 0
Automated Home-Cage Functional Imaging project
 
Resource Report
Resource Website
Automated Home-Cage Functional Imaging project (RRID:SCR_021567) data or information resource, instrument resource, portal, project portal Portal provides automated system for mesoscopic functional imaging that allows subjects to self initiate head fixation and imaging within home cage. Developed by University of British Columbia scientists. System for automated head fixation within mouse home cages. Instrument, mesoscopic functional imaging, self initiate head fixation, imaging within home cage, OpenBehavior is listed by: OpenBehavior
is related to: Automated Home-Cage Functional Imaging
has parent organization: University of British Columbia; British Columbia; Canada
DOI:10.1038/ncomms11611 Free, Freely available SCR_021567 SciCrunch Registry Automated Home-Cage Functional Imaging system 2026-10-24 12:48:55 0
Touchscreen Cognition
 
Resource Report
Resource Website
Touchscreen Cognition (RRID:SCR_021550) data or information resource, instrument resource, portal, project portal Project related to cognitive testing method for rodents.Provides touchscreen operant platform for testing learning and memory in rats and mice.Includes device chambers that can be used to measure rodent behavior.Not open source device. Cognitive testing, rodent, touchscreen operant platform, learning testing, memory testing, rat, mice, device chamber, measure rodent behavior, OpenBehavior is listed by: OpenBehavior Free, Freely available SCR_021550 SciCrunch Registry 2026-10-24 12:48:58 0
ACRoBaT
 
Resource Report
Resource Website
ACRoBaT (RRID:SCR_021546) data or information resource, instrument resource, portal, project portal Project related to studying motor behavior. University of Washington in Seattle scientists have developed and published their device for training rats to perform modified center out task. Instrument, automated device, training rats, perform modified center out task, OpenBehavior is listed by: OpenBehavior
has parent organization: University of Washington; Seattle; USA
DOI:10.1016/j.bbr.2017.11.031 Free, Freely available SCR_021546 SciCrunch Registry Automated Center out Rodent Behavioral Trainer 2026-10-24 12:48:55 0
Visual stimulator with customizable light spectra
 
Resource Report
Resource Website
1+ mentions
Visual stimulator with customizable light spectra (RRID:SCR_021545) data or information resource, instrument resource, portal, project portal Project related to visual neuroscience.Provides spatial visual stimulator with arbitrary spectrum of light for visual neuroscientists.Open source, low cost visual stimulator which can be customized with up to 6 chromatic channels. Spectrum of light can be arbitrary and customizable to be adapted to different animal models based on their visual spectrum. Device details, including parts list and information for custom python library for generating visual stimuli (QDSpy), can be found in eLife publication. Instrument, Visual stimulator, spatial visual stimulator, spectrum of light, visual neuroscience, OpenBehavior is listed by: OpenBehavior DOI:10.7554/elife.48779 Commercially available SCR_021545 SciCrunch Registry 2026-10-24 12:48:58 1
Wave Surfer
 
Resource Report
Resource Website
50+ mentions
Wave Surfer (RRID:SCR_021529) data acquisition software, data analysis software, data processing software, software application, software resource Open source software application for neurophysiology data acquisition and analysis. Program is based in MatLab, and evolved from earlier open source software package called Ephus. neurophysiology data acquisition, neurophysiology data analysis, neurophysiology data, MATLAB, OpenBehavior is listed by: OpenBehavior
is related to: Wave Surfer project
Free, Available for download, Freely Available https://edspace.american.edu/openbehavior/project/wave-surfer/ SCR_021529 SciCrunch Registry 2026-10-24 12:48:58 53
Camera Control
 
Resource Report
Resource Website
Camera Control (RRID:SCR_021614) software resource, software toolkit Open source software package that allows video to be recorded in sync with behavior. Python GUI and scripts allows investigators to record from multiple imaging source camera feeds with associated timestamps for each frame. Python API to record video system timestamps from Imaging Source USB cameras. Package requires Windows 10, Anaconda, and Git, and is compatible with Imaging Source USB3 cameras. Part of Camera Control project. Multiple imaging, source camera feeds, , record video system timestamps, Imaging Source USB cameras, OpenBehavior is listed by: OpenBehavior
is related to: Camera Control project
Free, Available for download, Freely Available https://edspace.american.edu/openbehavior/project/camera-control/ SCR_021614 SciCrunch Registry Camera_Control 2026-10-24 12:51:51 0
Dual Port Lick Detector
 
Resource Report
Resource Website
Dual Port Lick Detector (RRID:SCR_021521) software resource, software toolkit Distribution package for Dual Port Lick Detector.Package includes files relevant to building lick detector. Building lick detector files, lick detector, OpenBehavior is listed by: OpenBehavior
is related to: Dual port Lick Detector project
DOI:10.1152/jn.00500.2018 Free, Available for download, Freely Available https://edspace.american.edu/openbehavior/project/dual-port-lick-detector/ SCR_021521 SciCrunch Registry DP-Lick-Detector 2026-10-24 12:51:51 0
SHARCQ
 
Resource Report
Resource Website
1+ mentions
SHARCQ (RRID:SCR_022498) software resource, software toolkit Software tools to register histological section images and cell count locations to mouse brain atlas. Semi automated workflow and GUI for automated brain slice histology alignment, registration, and cell quantification. Used to explore Allen Mouse Brain Atlas, register asymmetric slice images to atlas using manual input, and analyze region of interest data by registering locations of fluorescently labeled cells to standardized regions of Atlas. OpenBehavior, atlas registration, brain mapping, cell-type, slicing, histology, cell quantification, automated, brain atlas, mice is listed by: OpenBehavior
is related to: Allen Mouse Brain Reference Atlas
is related to: Allen Institute for Brain Science
has parent organization: University of Colorado Boulder; Colorado; USA
PMID:35396257 Free, Available for download, Freely available https://edspace.american.edu/openbehavior/project/sharcq/ SCR_022498 SciCrunch Registry Slice Histology Alignment, and Cell Quantification, Registration 2026-10-24 12:51:53 2
AutomaticSleepScoringTool
 
Resource Report
Resource Website
AutomaticSleepScoringTool (RRID:SCR_022300) software resource, software toolkit Software pipeline for sleep researchers to perform automatic sleep scoring for rodents. Artificial neural network for automated behavioral state classification in rats. Artificial neural network, classifying behavioral states in rats, automatic sleep scoring, rat, electrophysiological readings, OpenBehavior is listed by: OpenBehavior DOI:10.7717/peerj.12127 Free, Available for download, Freely available https://edspace.american.edu/openbehavior/project/automaticsleepscoringtool/ SCR_022300 SciCrunch Registry 2026-10-24 12:51:53 0
Falcon
 
Resource Report
Resource Website
1+ mentions
Falcon (RRID:SCR_023199) software resource, software toolkit Open source software tool for closed loop neuroscientific experiments capable of sub-millisecond response latency over high-rate streaming data acquired from high-count multi-electrode arrays. Used for processing and controlling closed-loop neuroscience data. OpenBehavior, processing and controlling closed-loop data, implementing closed loop neuroscience experiments, high rate streaming data, high count multi electrode arrays, neuroscience data is listed by: OpenBehavior DOI:10.1088/1741-2552/aa7526 Free, Freely available https://edspace.american.edu/openbehavior/project/falcon/ SCR_023199 SciCrunch Registry 2026-10-24 12:51:56 7
LiftPose3D
 
Resource Report
Resource Website
LiftPose3D (RRID:SCR_023049) software application, software resource Software tool for transforming 2D poses to 3D coordinates on labaratory animals. Used for kinematic studies of laboratory animals. Tracking movements in three dimensions from behaving flies, mice, rats, and non-human primates. OpenBehavior, transforming 2D poses to 3D coordinates, kinematic studies, laboratory animals, tracking movements is listed by: OpenBehavior European Union Horizon 2020 ;
Mexican National Council for Science and Technology ;
SNSF Eccellenza ;
SNSF Project
PMID:34354294 Free, Available for download, Freely available https://edspace.american.edu/openbehavior/?s=LiftPose3D SCR_023049 SciCrunch Registry 2026-10-24 12:51:55 0
ColonyTrack
 
Resource Report
Resource Website
1+ mentions
ColonyTrack (RRID:SCR_023026) software resource, software toolkit Software R package to process raw data from ColonyRack system. In addition to generating pre processed data and quality control information, range of high level metrics are calculated together with convenient tools for analysis. OpenBehavior, discrete longitudinal tracking data, process raw data from ColonyRack system, generating pre processed data, quality control information is listed by: OpenBehavior Free, Available for download, Freely available https://edspace.american.edu/openbehavior/project/rtrack-colonytrack/ SCR_023026 SciCrunch Registry 2026-10-24 12:51:55 1
Raspberry Pi Grating
 
Resource Report
Resource Website
Raspberry Pi Grating (RRID:SCR_023157) RPG software resource, software toolkit Software Python package written for Raspberry Pi for displaying visual stimuli and to provide real time feedback on stimulus timing. High performance python library for displaying drifting gratings on Raspberry Pi 3. OpenBehavior, Raspberry Pi 3, displaying drifting gratings on Raspberry Pi 3, displaying visual stimuli, stimulus timing feedback, video data storage, data rapid display is listed by: OpenBehavior PMID:34464650 Free, Freely available, Available to download https://edspace.american.edu/openbehavior/project/rpg/ SCR_023157 SciCrunch Registry 2026-10-24 12:51:55 0
M3 Platform
 
Resource Report
Resource Website
M3 Platform (RRID:SCR_023425) software application, software resource Software neuroscience laboratory environment for simultaneous neuronal imaging and behavioral monitoring. McGill-Mouse-Miniscope Touchscreen Behavior Platform. Standardized approach for high throughput imaging of neuronal dynamics during behavior. OpenBehavior, touchscreen behavioral platform, calcium imaging, animal behavioral testing.standardized measurements, neuronal activity, behavioral tasks, disease modeling, mice is listed by: OpenBehavior Canada First Research Excellence Fund PMID:32691490 Free, Available for download, Freely available, https://edspace.american.edu/openbehavior/project/m3-platform-the-mcgill-mouse-miniscope-touchscreen-behavior-platform/ SCR_023425 SciCrunch Registry McGill-Mouse-Miniscope (M3) Platform, McGill-Mouse-Miniscope platform 2026-10-24 12:51:56 0
OpBox
 
Resource Report
Resource Website
1+ mentions
OpBox (RRID:SCR_023269) software resource, software toolkit Open source electrophysiology hardware and software package for simultaneous EEG and EMG acquisition from multiple subjects. OpenBehavior, electrophysiology, simultaneous EEG and EMG acquisition, is listed by: OpenBehavior DOI:10.1523/ENEURO.0212-20.2020 Free, Available for download, Freely available https://edspace.american.edu/openbehavior/?s=OpBoxPhys SCR_023269 SciCrunch Registry 2026-10-24 12:51:56 1
Open Face Homecage Running Wheel
 
Resource Report
Resource Website
Open Face Homecage Running Wheel (RRID:SCR_023642) instrument resource, software resource Open source, printable, open faced running wheels for mice residing in home cage that is automated to collect locomotor information such as distance traveled, wheel direction, and velocity. Running wheel system available on GitHub contains code and information to create and run running wheels. System consists of 3D printed wheel, Raspberry Pi 0 W, and supporting components. Running wheels for mice, OpenBehavior, instrument, running wheels, 3D printed wheel, is listed by: OpenBehavior PMID:36241420 Free, Available for download, Freely available https://edspace.american.edu/openbehavior/project/running-wheel/ SCR_023642 SciCrunch Registry 2026-10-24 12:51:57 0

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