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https://edspace.american.edu/openbehavior/project/opensource-lickometer-microstructure-analysis-program/

Portal provides open source lickometer that utilizes readily available or customizable components such as PC sound card and 3D printed drinking bottle holder. System consists of apparatus itself and open source software to collect and analyze data. Recording of raw data is handled by Audacity, open source audio program.

Proper citation: An Opensource lickometer and microstructure analysis program (RRID:SCR_021589) Copy   

•   Source: SciCrunch Registry
  

https://edspace.american.edu/openbehavior/project/pried/

Portal provides open Source 3-D Printed Modular micro drive system for acute primate neurophysiology.

Proper citation: PRiED (RRID:SCR_021586) Copy   

•   Source: SciCrunch Registry
  

https://edspace.american.edu/openbehavior/project/maple/

Portal related to measurement of fly social networks and behavior. Provides Drosophila handing robot that boasts modular design, allowing platform to both automate diverse phenotyping assays and aid with lab chores (e.g., collecting virgin female flies). MAPLE permits small part manipulator, USB digital camera, and fly manipulator to work simultaneously over platform of flies.

Proper citation: Modular Automated Platform for Large Scale Experiments project (RRID:SCR_021557) Copy   

•   Source: SciCrunch Registry
  

https://edspace.american.edu/openbehavior/project/arcontrol/

Portal related to delivering stimuli and monitoring responses. Provided behavioral platform was developed by scientists from Huazhong University of Science and Technology, Wuhan, China. System uses Arduino UNO board and simple drive circuit along with stand-along GUI application. Experimental data is automatically recorded with built-in data acquisition function and entire behavioral schedule is stored within Arduino chip.

Proper citation: ArControl project (RRID:SCR_021556) Copy   

•   Source: SciCrunch Registry
  

https://edspace.american.edu/openbehavior/project/snackclock/

Project related to feeding behavior.Provides device for dispensing pre-measured quantities of food at regular intervals throughout day. Device uses 24 hour clock movement to rotate dispenser wheel one revolution per day.

Proper citation: SnackClock (RRID:SCR_021554) Copy   

•   Source: SciCrunch Registry
  

https://edspace.american.edu/openbehavior/project/automated-home-cage-functional-imaging/

Portal provides automated system for mesoscopic functional imaging that allows subjects to self initiate head fixation and imaging within home cage. Developed by University of British Columbia scientists. System for automated head fixation within mouse home cages.

Proper citation: Automated Home-Cage Functional Imaging project (RRID:SCR_021567) Copy   

•   Source: SciCrunch Registry
  

https://github.com/openmv

Software tool as part of OpenMV system.

Proper citation: OpenMV (RRID:SCR_021615) Copy   

•   Source: SciCrunch Registry
  

https://github.com/pyControl

Open source software Python tool for behavioural experiment control. Part of pyControl system.

Proper citation: pyControl (RRID:SCR_021612) Copy   

•   Source: SciCrunch Registry
  

https://edspace.american.edu/openbehavior/project/open-ephys/

Organization mission is to advance understanding of brain by promoting community ownership of neuroscience tools.Collaborative effort to develop, document, and distribute open source tools for systems neuroscience.Project aims to distribute reliable open source software as well as tools for extracellular recording and stimulation.

Proper citation: Open Ephys (RRID:SCR_021624) Copy   

•   Source: SciCrunch Registry
  

https://edspace.american.edu/openbehavior/project/touchscreen-cognition-mousebytes/

Project related to cognitive testing method for rodents.Provides touchscreen operant platform for testing learning and memory in rats and mice.Includes device chambers that can be used to measure rodent behavior.Not open source device.

Proper citation: Touchscreen Cognition (RRID:SCR_021550) Copy   

•   Source: SciCrunch Registry
  

https://edspace.american.edu/openbehavior/project/acrobat/

Project related to studying motor behavior. University of Washington in Seattle scientists have developed and published their device for training rats to perform modified center out task.

Proper citation: ACRoBaT (RRID:SCR_021546) Copy   

•   Source: SciCrunch Registry
  

https://edspace.american.edu/openbehavior/project/multichromvisstim/

Project related to visual neuroscience.Provides spatial visual stimulator with arbitrary spectrum of light for visual neuroscientists.Open source, low cost visual stimulator which can be customized with up to 6 chromatic channels. Spectrum of light can be arbitrary and customizable to be adapted to different animal models based on their visual spectrum. Device details, including parts list and information for custom python library for generating visual stimuli (QDSpy), can be found in eLife publication.

Proper citation: Visual stimulator with customizable light spectra (RRID:SCR_021545) Copy   

•   Source: SciCrunch Registry
  

https://wavesurfer.janelia.org/

Open source software application for neurophysiology data acquisition and analysis. Program is based in MatLab, and evolved from earlier open source software package called Ephus.

Proper citation: Wave Surfer (RRID:SCR_021529) Copy   

•   Source: SciCrunch Registry
  

https://github.com/BadenLab/LED-Zappelin

Open source LED controller for arbitrary spectrum visual stimulation and optogenetics during 2 photon imaging. Device that rapidly time interleaves stimulation and detection epochs during two photon imaging.

Proper citation: LED Zappelin’ (RRID:SCR_022560) Copy   

•   Source: SciCrunch Registry
  

https://edspace.american.edu/openbehavior/project/deepethogram/

Software tool to extract relevant features from images and use time series of these features to classify whether given behavior is present in each frame of video recording.machine learning pipeline for supervised behavior classification from raw pixels. Performs action recognition ,automated behavior classification, over frames. Used for automated behavior classification to detect and track behavior over time.

Proper citation: DeepEthogram (RRID:SCR_022355) Copy   

•   Source: SciCrunch Registry
  

https://edspace.american.edu/openbehavior/project/mri-compatible-microdrive/

MRI compatible microdrive that can precisely position electrodes without causing significant imaging artifacts.

Proper citation: MRI Compatible Microdrive (RRID:SCR_022352) Copy   

•   Source: SciCrunch Registry
  

https://github.com/SunGL001/DeepBhvTracking

Software tool as novel tracking algorithm that combines deep learning and background subtraction.

Proper citation: DeepBhvTracking (RRID:SCR_022351) Copy   

•   Source: SciCrunch Registry
  

https://edspace.american.edu/openbehavior/project/neonatal-stereotax/

3D printed device for stereotaxic viral delivery into brains of neonatal mice.Used for stable and precise stereotaxic surgery in neonatal mice.

Proper citation: Neonatal Stereotaxic Mouse Adaptor (RRID:SCR_022349) Copy   

•   Source: SciCrunch Registry
  

https://edspace.american.edu/openbehavior/project/neuroethology-tools/

Software Matlab based tool to visualize and analyze multimodal datasets.

Proper citation: Behavior Ensemble and Neural Trajectory Observatory (RRID:SCR_022348) Copy   

•   Source: SciCrunch Registry
  

https://github.com/neuroethology/MARS_Developer

Software MARS based Python pipeline used for detection, pose estimation and behavior classification in experiments of any format. Repository contains all the code you'll need to train your own version of MARS.

Proper citation: MARS Developer (RRID:SCR_022346) Copy   

•   Source: SciCrunch Registry