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https://ebrains.eu/service/quicknii-and-visualign

EBRAINS service for image registration. Spatially register mouse and rat serial 2D brain images to 3D reference atlases.

Proper citation: QuickNII and VisuAlign (RRID:SCR_022818) Copy   

•   Source: SciCrunch Registry

https://scialli.utk.edu/

Organization mission is to expand cooperative ventures in research with Oak Ridge National Laboratory and enhance science and engineering research programs at University of Tennessee. Organization is affiliated with Tennessee Center of Excellence. Funding resource.

Proper citation: Science Alliance (RRID:SCR_023040) Copy   

•   Source: SciCrunch Registry

https://sufuorg.com/home.aspx

Organization to optimize the care of women, men, and children with lower urinary tract dysfunction and/or pelvic floor disorders through education, research and involvement in health care policy. To improve the art and science of Urology through basic and applied clinical research in urodynamics and neurourology, voiding function and dysfunction, female urology and pelvic floor dysfunction, and to disseminate and teach these concepts.

Proper citation: Society of Urodynamics, Female Pelvic Medicine and Urogenital Reconstruction (SUFU) (RRID:SCR_022874) Copy   

•   Source: SciCrunch Registry

https://www.iveindhoven.com/en/article/reichert-jung-ultracut-e-ultramicrotome/

Reichert Jung Ultracut E, article number 131-960, is used to cut ultrathin and semithin sections of resin embedded samples for electron microscopy.

Proper citation: Ultracut: E ultramicrotome (RRID:SCR_022980) Copy   

•   Source: SciCrunch Registry

https://www.bertin-technologies.com/product/sample-preparation-homogenizers/precellys24-tissue-homogenizer/

The Precellys 24 homogenizer with automatic tube locking system with the ability to process up to 24 tubes simultaneously., THIS RESOURCE IS NO LONGER IN SERVICE. Documented on September 16,2025.

Proper citation: Bertin Technologies: Precellys 24 tissue homogenizer (RRID:SCR_022979) Copy   

•   Source: SciCrunch Registry

https://www.inscopix.com/nvoke

Miniature microscope system that integrates in vivo cellular resolution calcium imaging with simultaneous or sequential optogenetic manipulation to causally link neural circuit activity with behavior.

Proper citation: iNSCOPIX: nVoke System (RRID:SCR_023028) Copy   

•   Source: SciCrunch Registry

http://www.bioconductor.org/packages/2.14/bioc/html/GLAD.html

Software for analysis of array CGH data: detection of breakpoints in genomic profiles and assignment of a status (gain, normal or loss) to each chromosomal regions identified.

Proper citation: GLAD (RRID:SCR_001284) Copy   

•   Source: SciCrunch Registry

http://sourceforge.net/projects/bycom/

A software which can perform methylcytosine calling from BS-seq (WGBS and RRBS), and permits either unmapped reads (FASTQ) or mapped reads (SAM/BAM) to be used as the input data. Certain SNPs (C>A/G) can also be selected in the output.

Proper citation: Bycom (RRID:SCR_000659) Copy   

•   Source: SciCrunch Registry

https://github.com/plaisier-lab/OncoMerge

Software tool to integrate somatic mutation types into comprehensive integrated somatic mutation matrix for downstream analyses.Somatic mutation integration platform that tames allelic heterogeneity, discovers causal mutations, integrates binary PAM and fusion with quantitative CNA data types, and overcomes known obstacles in cancer genetics. Used for systematic integration of protein affecting mutations, gene fusions, and copy number alterations into comprehensive somatic mutational profile.

Proper citation: OncoMerge (RRID:SCR_023079) Copy   

•   Source: SciCrunch Registry

http://prime.psc.riken.jp/compms/msdial/main.html

Software tool for data independent MS/MS deconvolution for comprehensive metabolome analysis. Universal program for untargeted metabolomics that supports multiple instruments (GC/MS, GC/MS/MS, LC/MS, and LC/MS/MS) and MS vendors (Agilent, Bruker, LECO, Sciex, Shimadzu, Thermo, and Waters). Used for untargeted metabolomics and lipidomics supporting any type of chromatography/mass spectrometry methods.

Proper citation: MS-DIAL (RRID:SCR_023076) Copy   

•   Source: SciCrunch Registry

https://www.yxlon.com/en/products/x-ray-and-ct-inspection-systems/yxlon-ff65-cl

X ray inspection system for automatic analysis of smallest and most demanding features within 3D IC, MEMS and sensors.

Proper citation: YXLON: FF65 CL 3D X-Ray (RRID:SCR_020910) Copy   

•   Source: SciCrunch Registry

http://www.biosurplus.com/store/models/3091-1450-microbeta-plus/

Wallac 1450 MicroBeta is a liquid scintillation counter and luminescence detector that can accommodate either 1, 2, 3, 6, or 12 detectors, each of which can count in 96- and 24- or 96- and 384-well plate formats. Samples may be counted in microplates, tubes, or on filters for added flexibility. The counter features dual photomultiplier tubes (PMT), with the first PMT set over the sample and the second located below. This method of coincidence counting provides optimal productivity for any compatible assay, including proximity and filtration assays among others.

Proper citation: Wallac: 1450 Liquid Scintillation Counter (RRID:SCR_020878) Copy   

•   Source: SciCrunch Registry

https://www.labx.com/item/rigaku-x-stream-2000-cryogenic-crystal-cooler-system/LV40211010

Cryogenic Crystal Cooler is a self-contained apparatus designed for cooling crystals to a temperature within the range of -180C to 4C. The X-stream 2000 system takes room air, compresses it, and removes the impurities from it to produce clean, dry nitrogen. This gas is then cooled to nearly -196C, and then rewarmed to the desired temperature

Proper citation: Rigaku: X-Stream 2000 Cryo-freezing System (RRID:SCR_020911) Copy   

•   Source: SciCrunch Registry

https://www.waters.com/waters/en_US/1525-Binary-HPLC-Pump/nav.htm?cid=534310&locale=en_US

Itegrated, high-pressure, binary HPLC pump that feature on-board pulse dampening and efficient mixing. Their pulse-free solvent flow, from analytical to semi-preparative flow rates, makes them best for use with highly sensitive detectors. Designed for use with 2 to 4.6 mm I.D. columns in routine LC and LC/MS applications, these pumps have a programmable flow-rate range of 0.00 to 10.00 mL/min in 0.01 mL increments.

Proper citation: Waters: 1525 Binary HPLC Pump (RRID:SCR_020875) Copy   

•   Source: SciCrunch Registry

https://www.waters.com/webassets/cms/support/docs/71500023202rc.pdf

Waters 2996 PDA Detector can be used for in-vitro diagnostic testing to analyze many compounds, including diagnostic indicators and therapeutically monitored compounds. It also describes detector optics and the principles of Spectral Contrast used in the Millennium32 software for analyzing the data from the PDA detector.

Proper citation: Waters: 2996 Photodiode Array Detector (RRID:SCR_020876) Copy   

•   Source: SciCrunch Registry

https://mobile.labwrench.com/equipment/22026/zeiss/axioplan-microscope-system

Upright microscopy imaging platform for complex research that is optimized for light transmission and extremely high contrast fluorescence imaging. This complete system comes fully configured for best performance, range and functionality.

Proper citation: Zeiss: Axioplan 2 imaginig system (RRID:SCR_020918) Copy   

•   Source: SciCrunch Registry

https://neuroscience-a2.sites.medinfo.ufl.edu/wordpress/files/2023/11/EN_product-info_Lightsheet-Z.1_rel-2.3.pdf

Light sheet fluorescence microscope for the imaging of large cleared specimens. Lightsheet Z.1 with Clr Plan-Apochromat 20x/1.0 Corr nd=1.38 is used to perform experiments with tissue cleared by Scale medium (Hama et al, Nat Neurosci. 2011), which has a refractive index of n=1.38.

Proper citation: Zeiss: Lightsheet Z.1 Fluorescence Microscope (RRID:SCR_020919) Copy   

•   Source: SciCrunch Registry

https://www.bcm.edu/research/advanced-technology-core-labs/lab-listing/optical-imaging-and-vital-microscopy-core/instrumentation-technology/lsm5live

Visible confocal microscope that acquires the X dimension simultaneously on a line CCD detector while scanning only in the Y dimension. This allows users to increase the speed of image acquisition compared to traditional confocal systems. This system is equipped with two fluorescence detectors and 4 lasers lines at 405nm, 488nm, 561nm and 633nm. It is capable of scanning over 120 FPS for a large field of view.

Proper citation: Zeiss: 5-Live (RRID:SCR_020916) Copy   

•   Source: SciCrunch Registry

https://mobile.labwrench.com/equipment/13553/zeiss/auriga-laser

Electron microscope with pulsed laser beam that creates images in high resolution in the nanometre range. This miscroscope allows the user to investigate your samples with X-ray analysis, rework interesting sample positions, and analyze non-conducting material and complex geometries.

Proper citation: Zeiss: Auriga Auriga (RRID:SCR_020914) Copy   

•   Source: SciCrunch Registry

https://www.olympus-ims.com/en/metrology/ols4100/

Laser scanning digital microscope for non-contact 3D observations and measurements of surface features at 10 nanometer resolutions with fast image acquisition and high-resolution images over wider area. Z-drive moves in steps less than 1nm, accuracy and repeatability guaranteed by Olympus. The system includes 5 objectives: 5x/0.15, 10x/0.30, 20x/0.60, 50x/0.95, and 100x/0.95.

Proper citation: Olympus: LEXT OLS4100 laser confocal microscope (RRID:SCR_020969) Copy   

•   Source: SciCrunch Registry