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https://github.com/gilestrolab/ethoscope

Software R package for data analysis.Enables high throughput analysis of behavior in Drosophila and other animals.

Proper citation: EthoScopes (RRID:SCR_021507) Copy   

•   Source: SciCrunch Registry
  

https://github.com/aarac/DeepBehavior

Software toolbox that automates taking high speed quality video to track behavior to analyze and track behavior in rodents and humans.

Proper citation: DeepBehavior (RRID:SCR_021414) Copy   

•   Source: SciCrunch Registry
  

https://edspace.american.edu/openbehavior/project/low-cost-eye-tracking/

Project related to eye tracking system for human research.System includes open source software for accurate eye tracking. Can identify shapes such as circles, lines, and triangles.You can rotate and mirror images and also use variety of filters.Capable of processing video in real-time for optical flow. App for viewing multiple video streams from USB cameras.

Proper citation: Low Cost Open Source Eye Tracking project (RRID:SCR_021415) Copy   

•   Source: SciCrunch Registry
  

https://edspace.american.edu/openbehavior/project/ethoscopes/

Project related to analysis of behavior in Drosophila.Provides system capable of real time video tracking. System includes raspberry pi and R package for data analysis. Enables high throughput analysis of behavior in Drosophila and other animals.

Proper citation: EthoScopes project (RRID:SCR_021426) Copy   

•   Source: SciCrunch Registry
  

https://edspace.american.edu/openbehavior/project/picamera/

Project related to tracking animals in large spaces. Picamera system allows for tracking of animals in large behavioral arenas.Open source scalable multi camera tracking system that can be used to track behavior in combination with wireless recording systems.Design is comprised of 8 overhead Raspberry Pi cameras, capable of recording at high frame rate in large field of view, recording video independently in individual Raspberry Pi microcomputers and processed using Picamera Python library.

Proper citation: Picamera project (RRID:SCR_021423) Copy   

•   Source: SciCrunch Registry
  

https://edspace.american.edu/openbehavior/project/live-mouse-tracker/

Project related to monitoring social interactions of mice. Provides real time behavioral analysis system for groups of mice.System includes random forest machine learning process, RFID sensors and infrared depth RGB-D camera.System includes software tool for Live Mouse Tracker analysis.

Proper citation: Live Mouse Tracker project (RRID:SCR_021421) Copy   

•   Source: SciCrunch Registry
  

https://github.com/SainsburyWellcomeCentre/Pyper

Software tool for motion tracking.Provides real time or pre recorded motion tracking of specimen in open field. Used to track path of object of interest in live feed from camera or recorded video. Used to track rodents in open field maze as well as retina of mice.New version v2 of Pyper allows to customise image processing to track different kind of objects.

Proper citation: Pyper (RRID:SCR_021511) Copy   

•   Source: SciCrunch Registry
  

https://github.com/cpapasavvas/LinCoM

Software MATLAB package for linearization of place fields in complex mazes.Graph theoretic approach for production of linear place fields in complex mazes. Used for producing linear place fields for hippocampal cells during behavior in complex mazes.Specifically designed to deal with mazes with one or more decision points (e.g., T-maze, W-maze, double T-maze, radial maze, plus maze, etc).

Proper citation: LinCoM (RRID:SCR_021519) Copy   

•   Source: SciCrunch Registry
  

https://github.com/neurospin/pypreclin

Software Python tool to processes raw macaque fMRI images using algorithms embedded in automatic pipeline.

Proper citation: Pypreclin (RRID:SCR_021526) Copy   

•   Source: SciCrunch Registry
  

https://github.com/oculomatic/oculomatic-release

Software tool for high speed eye tracking for Point Gray USB3.0 cameras.Oculomatic software tracks eye position within acquired image frame at frame rate dictated by image sensor.

Proper citation: Oculomatic (RRID:SCR_021525) Copy   

•   Source: SciCrunch Registry
  

https://github.com/chand-lab/openEyeTrack

Open source software tool used as part of multithreaded eye tracker.Video based eye tracker.

Proper citation: openEyeTrack (RRID:SCR_021401) Copy   

•   Source: SciCrunch Registry
  

https://github.com/MatthewBCooke/Pathfinder/

Open source software for analyzing spatial navigation search strategies.

Proper citation: Pathfinder (RRID:SCR_021520) Copy   

•   Source: SciCrunch Registry
  

https://edspace.american.edu/openbehavior/project/openmonkeystudio/

Project for tracking interactions among freely moving monkeys.System includes integrated hardware and software for pose tracking in freely moving rhesus macaques.

Proper citation: OpenMonkeyStudio project (RRID:SCR_021409) Copy   

•   Source: SciCrunch Registry
  

https://edspace.american.edu/openbehavior/project/rat/

Project related to rodent tracking and task control.Provides closed loop system for machine vision rodent tracking and task control created by scientist from Washington University. System to track and report mouse activity while they are contained in simple arena. System uses OpenMV M7 microcontroller to acquire images of arena and process them in real-time to report mouse centroid data to text file. Wireless position tracker for automatically tracking mice in high contrast arenas.

Proper citation: Rodent Arena Tracker project (RRID:SCR_021408) Copy   

•   Source: SciCrunch Registry
  

https://edspace.american.edu/openbehavior/project/nerd/

Portal provides open source neural recording device for wireless transmission of local field potential data in freely behaving animals. Used for electrophysiological recording of local field potentials in freely behaving animals.

Proper citation: NeRD (RRID:SCR_021582) Copy   

•   Source: SciCrunch Registry
  

https://github.com/ninscope

Sofware tool for use with NINscope.

Proper citation: NINscope software (RRID:SCR_021583) Copy   

•   Source: SciCrunch Registry
  

https://edspace.american.edu/openbehavior/project/ninscope/

Portal provides miniscope for fluorescence imaging and optogenetic stimulation. Used for monitoring of neural signals during unrestrained behavior.

Proper citation: NINscope (RRID:SCR_021577) Copy   

•   Source: SciCrunch Registry
  

https://edspace.american.edu/openbehavior/project/3d-printed-headcap-microdrive/

Portal provides novel head cap and microdrive design for chronic multi electrode recordings in rats through use of 3D printing technology. Head cap and microdrive designs can be fabricated at little cost using consumer grade 3D printers.

Proper citation: 3D Printed Headcap and Microdrive (RRID:SCR_021595) Copy   

•   Source: SciCrunch Registry
  

https://edspace.american.edu/openbehavior/project/multicam-headmount/

Portal provides system of two multi camera head mounts for mice in order to record physiological changes in certain behaviors. System used for video tracking of rodents behavior.

Proper citation: A Head Mounted Multi Camera System for Freely Moving Mice project (RRID:SCR_021591) Copy   

•   Source: SciCrunch Registry
  

https://edspace.american.edu/openbehavior/project/microwave-based-homecage-motion-detector/

Portal provides radar based motion detector for home cage activity monitoring in mice. System is used for motion detection without visual contact to animal and can be used with various cage types. Features custom printed circuit board and motion detector shield for Arduino, which saves raw activity and timestamped data in CSV files onto SD card.Developed by Max Planck Institute of Psychiatry scientists. Authors also provide Python script for data analysis and generation of actograms.

Proper citation: Microwave based Homecage Motion Detector project (RRID:SCR_021590) Copy   

•   Source: SciCrunch Registry