Tools   Select Another Resource Report Type

https://github.com/vivian-imbriotis/rpg

Software Python package written for Raspberry Pi for displaying visual stimuli and to provide real time feedback on stimulus timing. High performance python library for displaying drifting gratings on Raspberry Pi 3.

Proper citation: Raspberry Pi Grating (RRID:SCR_023157) Copy   

•   Source: SciCrunch Registry

https://m3platform.weebly.com/

Software neuroscience laboratory environment for simultaneous neuronal imaging and behavioral monitoring. McGill-Mouse-Miniscope Touchscreen Behavior Platform. Standardized approach for high throughput imaging of neuronal dynamics during behavior.

Proper citation: M3 Platform (RRID:SCR_023425) Copy   

•   Source: SciCrunch Registry

https://github.com/KimchiLab/OpBoxPhys

Open source electrophysiology hardware and software package for simultaneous EEG and EMG acquisition from multiple subjects.

Proper citation: OpBox (RRID:SCR_023269) Copy   

•   Source: SciCrunch Registry

https://github.com/TomGeorge1234/RatInABox

Software Python toolkit for modelling locomotion and neuronal activity in continuous environments. Used to model realistic rodent locomotion and generate synthetic electrophysiological data from spatially modulated cell types.

Proper citation: RatInABox (RRID:SCR_023682) Copy   

•   Source: SciCrunch Registry

https://github.com/WinterLab-Berlin/LabNet

Open source software for parallel control over multiple behavioral systems.C++ optimized control layer software to give access to Raspberry Pi connected hardware. Suitable for time critical operations, and to be simple to expand. Used for general automation in experimental laboratories with its control PC located at some distance.

Proper citation: LabNet (RRID:SCR_023712) Copy   

•   Source: SciCrunch Registry

https://github.com/fdechaumont/lmt-analysis

Software package for Live Mouse Tracker analysis. lmt-analysis provides all analysis tools needed to extract information from tracking performed by live mouse tracker.

Proper citation: Live Mouse Tracker analysis (RRID:SCR_021505) Copy   

•   Source: SciCrunch Registry

https://mousebytes.ca/home

Open access database for all cognitive data collected from touchscreen related tasks. Performs data comparison and interactive data visualization for any data uploaded onto the site. There are also guidelines and video tutorials available.

Proper citation: Mousebytes (RRID:SCR_017904) Copy   

•   Source: SciCrunch Registry

https://edspace.american.edu/openbehavior/project/laubach-lab-github-repository/

Portal related to control and decision making, focusing on role of prefrontal cortex. American University scientists through their GitHub repository provide 3D print files for many of behavioral devices used in their lab, including Nosepoke and Lickometer designed from rats.

Proper citation: Laubach Lab GitHub Repository project (RRID:SCR_021464) Copy   

•   Source: SciCrunch Registry

https://edspace.american.edu/openbehavior/project/vasic/

Project related to assessment of pain in animal models.Provided system includes weight bearing device for high throughput and unbiased behavioral pain assessment in rodents.Includes custom printed circuit board, infrared sensor, Arduino microcontroller, 3D printed parts, and open source software for analysis.

Proper citation: Voluntary Access Static Incapacitance Chamber project (RRID:SCR_021458) Copy   

•   Source: SciCrunch Registry

https://sourceforge.net/projects/toxtrac/

Software tool for tracking organisms.

Proper citation: ToxTrac (RRID:SCR_021502) Copy   

•   Source: SciCrunch Registry

https://edspace.american.edu/openbehavior/project/arduipod-box/

Project related to presenting visual and auditory stimuli, recording behavior in form of nose pokes or screen touches, and delivering liquid rewards. ProvidesOperant chamber built with iPod Touch and Arduino microcontroller as main components.

Proper citation: ArduiPod Box project (RRID:SCR_021466) Copy   

•   Source: SciCrunch Registry

https://github.com/ThreeD-Tracker-FAB

Open source software tool for 3D-video based markerless computerized behavioral analysis for laboratory animals.Used to reconstruct full 3D images of animals and fit skeletal models to 3D image to estimate 3D pose of animals.Open-source 3D video based behavioral analysis system for neuroscience.

Proper citation: 3DTracker (RRID:SCR_021506) Copy   

•   Source: SciCrunch Registry

https://github.com/gilestrolab/ethoscope

Software R package for data analysis.Enables high throughput analysis of behavior in Drosophila and other animals.

Proper citation: EthoScopes (RRID:SCR_021507) Copy   

•   Source: SciCrunch Registry

https://edspace.american.edu/openbehavior/project/open-source-joystick/

Project related to studying motor behavior and decision making in mice. Open source behavior training platform for studying motor control, decision making, and reaching reaction time. Enables behavioral work to study unexplored features of action selection, motivation, and value based decisions.

Proper citation: Joystick project (RRID:SCR_021442) Copy   

•   Source: SciCrunch Registry

https://edspace.american.edu/openbehavior/project/catalepsybar/

Project related to measuring of muscular rigidity that can result from several factors including Parkinsons disease, or pharmacological exposure to antipsychotics or cannabis. Provides automated apparatus for measuring catalepsy that increases measurement accuracy and reduces observer bias.Catalepsy bar test automatically measures and records time it takes for rat to remove its forelimbs from bar. 3D printed test apparatus used to make catalepsy measurements in rats more standardized and accurate.

Proper citation: Catalepsy Bar project (RRID:SCR_021439) Copy   

•   Source: SciCrunch Registry

https://edspace.american.edu/openbehavior/project/open-skinner-box/

Project related to training animal behavior. Provides system which includes full behavioral apparatus and software platform. System includes software tool for data logging and analysis.

Proper citation: Skinner Box project (RRID:SCR_021437) Copy   

•   Source: SciCrunch Registry

https://edspace.american.edu/openbehavior/project/optopad-and-flypad/

Project related to analysis of behavior and of neural activity. Provides FPGA code for running main board of flyPAD.

Proper citation: flyPAD project (RRID:SCR_021449) Copy   

•   Source: SciCrunch Registry

https://github.com/aarac/DeepBehavior

Software toolbox that automates taking high speed quality video to track behavior to analyze and track behavior in rodents and humans.

Proper citation: DeepBehavior (RRID:SCR_021414) Copy   

•   Source: SciCrunch Registry

https://edspace.american.edu/openbehavior/project/low-cost-eye-tracking/

Project related to eye tracking system for human research.System includes open source software for accurate eye tracking. Can identify shapes such as circles, lines, and triangles.You can rotate and mirror images and also use variety of filters.Capable of processing video in real-time for optical flow. App for viewing multiple video streams from USB cameras.

Proper citation: Low Cost Open Source Eye Tracking project (RRID:SCR_021415) Copy   

•   Source: SciCrunch Registry

https://github.com/mtlippert/CAVE

Open source tool for combined analysis of head mounted calcium imaging and behavior. Used to analyze imaging data from head mounted microscopes simultaneously with behavioral data.

Proper citation: Calcium ActiVity Explorer (RRID:SCR_021498) Copy   

•   Source: SciCrunch Registry