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https://resources.revvity.com/pdfs/tch-opera-phenix-plus-improved-3d-imaging.pdf

Opera Phenix Plus system for high throughput high content assays, phenotypic screening, assays using complex disease models, such as live cells, primary cells and microtissues, and fast response assays like calcium flux or cardiomyocyte beating.Optical design lets you generate information through confocal imaging and at higher throughput through simultaneous acquisition. Delivers speed without compromising sensitivity. Uses Harmony High Content Imaging and Analysis Software to quantify complex cellular phenotypes. Harmony software is designed for PerkinElmer high content screening systems.

Proper citation: Perkin Elmer: Opera Phenix Plus High Content Screening System (RRID:SCR_021100) Copy   

•   Source: SciCrunch Registry
  

https://www.microscope.healthcare.nikon.com/en_EU/products/inverted-microscopes/eclipse-ti2-series

Inverted microscope delivers unparalleled 25mm field of view. With this FOV, the Ti2 maximizes sensor area of large format CMOS cameras without making compromises, and significantly improves data throughput. Stable, drift free platform designed to meet demands of super resolution imaging with high speed imaging applications. Status of each sensor is automatically recorded during acquisition, providing quality control for imaging experiments and enhancing data reproducibility.

Proper citation: Nikon: ECLIPSE Ti2 inverted microscope (RRID:SCR_021068) Copy   

•   Source: SciCrunch Registry
  

https://www.robotreviewer.net/about

Open source web based system that uses machine learning and NLP to semi automate biomedical evidence synthesis, to aid practice of Evidence Based Medicine. Processes full text journal articles describing randomized controlled trials. Designed to automatically extract key data items from reports of clinical trials.

Proper citation: RobotReviewer (RRID:SCR_021064) Copy   

•   Source: SciCrunch Registry
  

https://chanzuckerberg.com/science/programs-resources/single-cell-biology/cellxgene/

Software tool as interactive explorer for single cell transcriptomics datasets. Used to explore and visualize high dimensional single cell datasets in interactive way. Can visualize gene expression at level of entire dataset or particular subset of cells to help identify cell types, which can in turn help identify diseases. Enables plotting gene expression level against another gene to compare how these different genes are expressed across dataset. Open source cell visualization tool integrates with tools like SciPy and Jupyter.

Proper citation: cellxgene (RRID:SCR_021059) Copy   

•   Source: SciCrunch Registry
  

https://biospherix.com/oxycycler-gt4181c/

Carbon Monoxide, O2, and CO2 controller that also features limit control of relative humidity and monitoring of temperature conditions when used in combination with C-Chamber Incubator Subchamber from BioSpherix. This system also features secondary monitor for Carbon Monoxide and may be used in combination with I-Hood Incubator Hood from BioSpherix for ventilating fumes.

Proper citation: BioSpherix: Oxycycler GT4181C Controller (RRID:SCR_021111) Copy   

•   Source: SciCrunch Registry
  

https://github.com/Danis102/seqpac

Software R package for analysis of short sequenced reads. Framework for small RNA analysis in R using Sequence Based Counts.Can be applied on any type of data generated by large scale nucleotide sequencing, where user wish to maintain sequence integrity during whole analysis.

Proper citation: seqpac (RRID:SCR_021079) Copy   

•   Source: SciCrunch Registry
  

https://biospherix.com/oxycycler-gt41/

O2 and CO2 controller that also features relative humidity limit control and monitoring of temperature conditions when used in combination with C-Chamber Incubator subchamber from BioSpherix.

Proper citation: BioSpherix: OxyCycler GT41 Controller (RRID:SCR_021110) Copy   

•   Source: SciCrunch Registry
  

https://biospherix.com/oxycycler-c42/

Incubator controls dynamic or static levels of O2 and CO2 and offers O2 and CO2 profiling. Dual channel and dual gas controller for incubators and C-Chambers. Oxygen and carbon dioxide control is managed via independently programmable channels for optimum control. Applications of OxyCycler C42 incubator controller include intermittent hypoxia, graded hypoxia, and timed hyperoxia.Comes with computer software for easy interface, real time trend charting, data logging, and remote operation.

Proper citation: BioSpherix: OxyCycler C42 Controller (RRID:SCR_021109) Copy   

•   Source: SciCrunch Registry
  

https://github.com/chhylp123/hifiasm

Software tool as haplotype resolved de novo assembler for PacBio Hifi reads. Can assemble human genome in several hours.Introduces new graph binning algorithm and achieves haplotype resolved assembly given trio data. Takes advantage of long high fidelity sequence reads to represent haplotype information in phased assembly graph. Preserves contiguity of all haplotypes.

Proper citation: Hifiasm (RRID:SCR_021069) Copy   

•   Source: SciCrunch Registry
  

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https://biology-assets.anu.edu.au/GenAlEx/Welcome.html

Software tool as cross platform package for population genetic analyses that runs within Microsoft Excel. Offers analysis of diploid codominant, haploid and binary genetic loci and DNA sequences.Originally developed as teaching tool to facilitate teaching population genetic analysis at graduate level.

Proper citation: GenAlEx (RRID:SCR_021102) Copy   

•   Source: SciCrunch Registry
  

https://www.advent-rm.com/en-GB/

Supplier of high purity metals, alloys and polymers including Aluminium, Indium, Platinum, Silver, Gold, Copper, Indium, Iridium, Rhodium and Tantalum in multiple forms, dimensions and purities.

Proper citation: Advent research materials LTD (RRID:SCR_021045) Copy   

•   Source: SciCrunch Registry
  

http://www.cnbc.cmu.edu/braingroup/papers/ETL-200%20Instructional%20Manual.pdf

Images and tracks one eye of human subject or lower animal at operator selected sampling rate at 120 Hz or 240 Hz. Contains all components to record eye movements as subject views imagery presented on computer screen or other visual display device. Configured to track one eye and allows for up to approximately one to two inches of side to side or up and down head movement.

Proper citation: ISCAN: ETL-200 Primate Eye Tracking Laboratory (RRID:SCR_021044) Copy   

•   Source: SciCrunch Registry
  

https://www.sutter.com/MICROPIPETTE/p-1000.html

P-1000 include diagnostic testing of all puller components, built in error detection of air pressure loss or filament burnout, easy access to ramp test, measurement of jaw temperature, and access to previous pull results with heat on times for each cycle of program.Help topics are pre-loaded to assist with on-site troubleshooting and built-in glossary includes text, pictures, and diagrams explaining terms used in micropipette fabrication. Rotary dial is offered as alternative to keypad for numerical entry.

Proper citation: Sutter: P-1000 Next Generation Micropipette Puller (RRID:SCR_021042) Copy   

•   Source: SciCrunch Registry
  

https://mdc.custhelp.com/euf/assets/content/MultiClamp_700A_Manual2.pdf

Computer controlled microelectrode current and voltage clamp amplifier for electrophysiology and electrochemistry. It is a versatile instrument capable of single-channel and whole-cell voltage clamping, current clamping, ionselective electrode recording, voltammetry and amperommetry.

Proper citation: Molecular Devices: MultiClamp 700A Microelectrode Amplifier (RRID:SCR_021040) Copy   

•   Source: SciCrunch Registry
  

https://campdeninstruments.com/products/ceramic-blades-5-pack

Specialized Ceramic blades for Campden Vibrating Microtomes. These blades are honed with single bevel for superior slicing, particularly in tissue from older animals. They also work with the VT100S, Leica Biosystems.

Proper citation: Campden Instruments Ceramic Blades (RRID:SCR_021036) Copy   

•   Source: SciCrunch Registry
  

https://www.harvardapparatus.com/

Major US manufacturer of specialized physiological research laboratory equipment with current headquarters in Holliston, Massachusetts.Now part of Harvard Bioscience family of companies.

Proper citation: Harvard Apparatus (RRID:SCR_021037) Copy   

•   Source: SciCrunch Registry
  

https://satijalab.org/signac/index.html

Software framework for analysis of single cell chromatin data. Used for analysis, interpretation, and exploration of single cell chromatin datasets including datasets that co-assay DNA accessibility with gene expression, protein abundance, and mitochondrial genotype. Analysis of single-cell chromatin data including peak calling, quantification, quality control, dimension reduction, clustering, integration with single-cell gene expression datasets, DNA motif analysis, and interactive visualization.

Proper citation: Signac (RRID:SCR_021158) Copy   

•   Source: SciCrunch Registry
  

https://www.waters.com/waters/en_US/High-Definition-Imaging-(HDI)-Software/nav.htm?cid=134833914&locale=en_US

Software package contains data analysis and processing tools required for rapid and effective interrogation of imaging data. Allows for full integration of full spectrum molecular imaging experiments on SYNAPT family platforms, as well as DESI imaging on Xevo G2-XS QTof Mass Spectrometers, using single user interface.

Proper citation: Waters High Definition Imaging (RRID:SCR_021054) Copy   

•   Source: SciCrunch Registry
  

https://www.fluidigm.com/singlearticles/cytof-software-upgrade-7dot0

Software for analyzing mass cytometry (CyTOF) data.

Proper citation: Fluidigm CyTOF (RRID:SCR_021055) Copy   

•   Source: SciCrunch Registry
  

https://www.synapse.org/#!Synapse:syn22345748/wiki/605339

Reference dataset of multiplexed immunofluorescence microscopy images collected at HMS Laboratory of Systems Pharmacology. Includes set of images of different types for development and benchmarking of computational methods for image processing. As of 4/2/2021, EMIT comprises tissue microarray containing cores from 34 cancer, non-neoplastic diseases, and normal tissue collected from clinical discards under IRB supervised protocol. TMA was imaged using cyclic immunofluorescence method. Additional extensions of EMIT are currently in the planning stages. Long term goal is to compose ImageNet like resource for highly multiplexed images of tissues and tumors by consolidating high quality curated datasets.

Proper citation: Exemplar Microscopy Images of Tissues (RRID:SCR_021052) Copy   

•   Source: SciCrunch Registry