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| Resource Name | Proper Citation | Abbreviations | Resource Type |
Description |
Keywords | Resource Relationships | |||||||||||||
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ILR Resource Report Resource Website |
ILR (RRID:SCR_007895) | ILR | software resource, software application | THIS RESOURCE IS NO LONGER IN SERVICE. Documented on May 5th,2023. Software application for calculation of the restricted likelihood-ratio affected sib-pair test for linkage allowing for imprinting (entry from Genetic Analysis Software) | gene, genetic, genomic, sas macro | is listed by: Genetic Analysis Software | THIS RESOURCE IS NO LONGER IN SERVICE | SCR_007895 | Imprinting Likelihood Ratio | 2026-08-01 12:10:40 | 0 | ||||||||
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SPSAC - Stockholm PSA Cohort Resource Report Resource Website 1+ mentions |
SPSAC - Stockholm PSA Cohort (RRID:SCR_006042) | SPSAC | biomaterial supply resource, material resource | THIS RESOURCE IS NO LONGER IN SERVICE. Documented on May 3rd,2023. Recently it has been discovered that specific Single Nucleotide Polymorphisms (SNPs) may elevate the risk of developing prostate cancer. This study aims at investigating whether it is possible to use these SNPs in a clinical setting in order to sharpen the diagnostic tools when investigating if a man has prostate cancer. By collecting blood from men who have undergone a needle biopsy of the prostate and do a SNP analysis of their genes and compare this with the result of the biopsy and PSA result we hope to be able to develop a test that is more specific than the routine that is being used today. Sample types: * EDTA whole blood * DNA Number of sample donors: 5321 (June 2010) | single nucleotide polymorphism, diagnostic tool, prostate, cancer, male, man, gene, biopsy, psa |
is listed by: One Mind Biospecimen Bank Listing has parent organization: Karolisnka Biobank |
Prostate cancer | THIS RESOURCE IS NO LONGER IN SERVICE | nlx_151439 | SCR_006042 | KI Biobank - SPSAC, Stockholm PSA Cohort | 2026-08-01 12:10:52 | 1 | ||||||
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SIBMED Resource Report Resource Website 1+ mentions |
SIBMED (RRID:SCR_007495) | SIBMED | software resource, software application | Software application that identifies likely genotyping errors and mutations for a sib pair in the context of multipoint mapping. (entry from Genetic Analysis Software) | gene, genetic, genomic, fortran 77, ms-windows, unix, bio.tools |
is listed by: Genetic Analysis Software is listed by: bio.tools is listed by: Debian |
biotools:sibmed, nlx_154043 | https://bio.tools/sibmed | SCR_007495 | SIBling Mutation and Error Detection | 2026-08-01 12:10:51 | 1 | |||||||
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KI Biobank - PAROKRANK Resource Report Resource Website 1+ mentions |
KI Biobank - PAROKRANK (RRID:SCR_006045) | PAROKRANK | biomaterial supply resource, material resource | THIS RESOURCE IS NO LONGER IN SERVICE, documented September 2, 2016. Cardiovascular disease and periodontitis are common diseases, causing considerable suffering and costs. Despite strong links between the two diseases it is unclear if periodontitis causes cardiovascular disease. The primary aims are to investigate whether periodontitis is a risk factor for the development of myocardial infarction and if periodontitis increases the risk for new cardiovascular events such as myocardial infarction, stroke and death in patients with a previous myocardial infarction. PAROKRANK is a case control study. Cases (n=1500) are patients with a first myocardial infarction and controls population derived people without cardiovascular disease(n=1500). Both groups are subjected to predefined dental examinations, analyses of a variety of risk factors and a biobank of blood and dental samples will be established. Information is collected from available registries (RIKS-HIA and SEPHIA) and study specific records. | death, dental exam, cardiovascular disease |
is listed by: One Mind Biospecimen Bank Listing has parent organization: Karolisnka Biobank |
Cardiovascular disease, Periodontitis, Myocardial infarction, Stroke, Normal control | THIS RESOURCE IS NO LONGER IN SERVICE | nlx_151443 | SCR_006045 | 2026-08-01 12:10:49 | 1 | |||||||
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COEUS Resource Report Resource Website 1+ mentions |
COEUS (RRID:SCR_006287) | COEUS | software resource, software application | A semantic web-powered knowledge management framework, aiming at a streamlined application development cycle and following a semantic web in a box approach. The framework provides a single package including advanced data integration and triplification tools, base ontologies, a web-oriented engine and a flexible exploration API. Resources can be integrated from heterogeneous sources, including CSV and XML files or SQL and SPARQL query results, and mapped directly to one or more ontologies. Advanced interoperability features include REST services, a SPARQL endpoint and LinkedData publication. These enable the creation of multiple applications for web, desktop or mobile environments, and empower a new knowledge federation layer. It is targeted at rapid application deployment of new applications in any research field, supported by a comprehensive integration engine and an advanced data distribution API. | data integration, interoperability, ontology, semantic web, bioinformatics, biomedical, semantic web framework, rapid application deployment, linked data, web service, biomedical application, biomedical semantics, bio.tools |
is listed by: Debian is listed by: bio.tools has parent organization: University of Aveiro; Aveiro; Portugal |
PMID:23244467 | Open unspecified license | biotools:coeus, nlx_151933 | https://bio.tools/coeus | SCR_006287 | 2026-08-01 12:10:52 | 6 | ||||||
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MAP MANAGER QT Resource Report Resource Website |
MAP MANAGER QT (RRID:SCR_008101) | MAP MANAGER QT | software resource, software application | A graphic, interactive program to map quantitative trait loci by regression methods; MAP MANAGER CLASSIC enhanced by quantitative trait mapping. (entry from Genetic Analysis Software) | gene, genetic, genomic, pascal, macos | is listed by: Genetic Analysis Software | nlx_154466 | SCR_008101 | 2026-08-01 12:10:53 | 0 | |||||||||
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ZMP Resource Report Resource Website 10+ mentions |
ZMP (RRID:SCR_006161) | ZMP | biomaterial supply resource, material resource | Create knockout alleles in protein coding genes in the zebrafish genome, using a combination of whole exome enrichment and Illumina next generation sequencing, with the aim to cover them all. Each allele created is analyzed for morphological differences and published on the ZMP site. Transcript counting is performed on alleles with a morphological phenotype. Alleles generated are archived and can be requested from this site through the Zebrafish International Resource Center (ZIRC). You may register to receive updates on genes of interest, or browse a complete list, or search by Ensembl ID, gene name or human and mouse orthologue. | phenotype, genome, gene, disease model, allele, orthologue, mutant, chromosome, human orthologue, mouse orthologue, mutation, knockout, human, mouse, transcript |
is listed by: One Mind Biospecimen Bank Listing is related to: Zebrafish International Resource Center has parent organization: Wellcome Trust Sanger Institute; Hinxton; United Kingdom |
Wellcome Trust Sanger Institute; Hinxton; United Kingdom ; NIH ; ZF-HEALTH |
Free and open | nlx_151662 | SCR_006161 | Zebrafish Mutation Project (ZMP), Zebrafish Mutation Project, ZMP - Zebrafish Mutation Project | 2026-08-01 12:10:52 | 25 | ||||||
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S Resource Report Resource Website |
S (RRID:SCR_007646) | S | software resource, software application | THIS RESOURCE IS NO LONGER IN SERVICE. Documented September 15, 2017. Software application (entry from Genetic Analysis Software) | gene, genetic, genomic | is listed by: Genetic Analysis Software | THIS RESOURCE IS NO LONGER IN SERVICE | nlx_154605 | SCR_007646 | 2026-08-01 12:10:53 | 0 | ||||||||
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LDA Resource Report Resource Website |
LDA (RRID:SCR_007527) | LDA | software resource, software application | THIS RESOURCE IS NO LONGER IN SERVCE, documented September 22, 2016. A Java program for analyzing the pairwise linkage disequilibrium. | gene, genetic, genomic, java, ms-windows, linux, macos | is listed by: Genetic Analysis Software | THIS RESOURCE IS NO LONGER IN SERVICE | nlx_154088 | SCR_007527 | Linkage Disequilibrium Analyzer | 2026-08-01 12:10:40 | 0 | |||||||
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NF Registry Resource Report Resource Website 1+ mentions |
NF Registry (RRID:SCR_006277) | NF Registry | patient registry, people resource | A patient registry to identify people with neurofibromatosis (NF) who are interested in participating in clinical trials, as well as determining the commonality of specific characteristics of NF. The NF Registry is committed to secure methodologies and pioneering research that will lead to improving the health and well-being of individuals and families affected by NF. This registry has been created to collect data on large numbers of people with NF. This has never existed before and will help: * Identify people who may be eligible for clinical trials or other research studies being conducted in the field of NF. New clinical trials are launched each year yet challenges identifying participants too often mean that these studies finish late or never really get started. Today, 80 percent of trials fail to recruit enough volunteers within planned timelines. Under enrollment is one of the most significant problems facing NF drug development. Together, we can solve it. * Determine the commonality of specific NF characteristics. This will help researchers and doctors devise better ways to care for people with NF If you or your child has been diagnosed with neurofibromatosis (NF) please join the NF Registry today. It''s quick, it''s easy, and it matters. The key to treatments lies within you researchers can''t deliver treatments without committed volunteers. | clinical trial, research study, adult human, child | has parent organization: PatientCrossroads | Neurofibromatosis | Childrens Tumor Foundation | nlx_151888 | SCR_006277 | Children''s Tumor Foundation NF Registry, Neurofibromatosis Registry, CTF NF Registry | 2026-08-01 12:10:49 | 1 | ||||||
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International Mouse Phenotyping Consortium (IMPC) Resource Report Resource Website 1000+ mentions |
International Mouse Phenotyping Consortium (IMPC) (RRID:SCR_006158) | IKMC, IMPC | biomaterial supply resource, material resource | Center that produces knockout mice and carries out high-throughput phenotyping of each line in order to determine function of every gene in mouse genome. These mice will be preserved in repositories and made available to scientific community representing valuable resource for basic scientific research as well as generating new models for human diseases. | phenotype, phenotyping, gene, knockout mouse, knockout, genome, function, gene function, mouse model, mutation, embryonic stem cell, genotype, disease, anatomy, procedure, image, experimental protocol, annotation, genotype-phenotype, FASEB list |
uses: LAMA is used by: NIF Data Federation is recommended by: NIDDK Information Network (dkNET) lists: VPV is listed by: One Mind Biospecimen Bank Listing is listed by: NIDDK Information Network (dkNET) is affiliated with: iMITS is related to: HARP is related to: KOMP2 is related to: Knockout Mouse Project Repository at JAX is related to: TheBehaviourForum.org is parent organization of: Impress provides: Knockout Mouse Project Repository works with: GenTaR |
NIH Office of the Director UM1 OD023222 | PMID:27626380 PMID:24652767 PMID:24197666 PMID:25127743 PMID:25343444 PMID:24642684 PMID:21677750 PMID:22968824 PMID:22940749 PMID:22991088 PMID:25992600 PMID:22566555 PMID:23519032 PMID:22211970 PMID:24194600 PMID:26147094 PMID:24634472 PMID:24932005 PMID:25093073 PMID:24046361 PMID:24033988 PMID:23315689 PMID:22926223 PMID:21185382 PMID:21737429 PMID:19933761 PMID:19689210 PMID:17905814 PMID:17218247 PMID:16933996 PMID:16254554 PMID:15908916 PMID:15340423 PMID:15340424 PMID:28650954 PMID:28650483 PMID:29026089 PMID:29348434 PMID:29352221 PMID:29396915 PMID:29626206 PMID:22566555 |
Free, Freely available | nlx_151660 | https://www.mousephenotype.org/data/documentation/data-access | SCR_006158 | KOMP, KOMP-CSD, KOMP-Regeneron, IMPC - International Mouse Phenotyping Consortium, International Mouse Phenotyping Consortium, IMPC, International Mouse Phenotyping Consortium (IMPC), EUCOMM, IKMC | 2026-08-01 12:10:49 | 2449 | ||||
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Mesh-based Monte Carlo (MMC) Resource Report Resource Website |
Mesh-based Monte Carlo (MMC) (RRID:SCR_006950) | MMC | software resource, software application | A Monte Carlo (MC) solver for photon migration in 3D turbid media. Different from existing MC software designed for layered (such as MCML) or voxel-based media (such as MMC or tMCimg), MMC can represent a complex domain using a tetrahedral mesh. This not only greatly improves the accuracy of the solutions when modeling objects with smooth/complex boundaries, but also gives an efficient way to sample the problem domain to use less memory. The current version of MMC support multi-threaded programming and can give a almost proportional speed-up when using multiple CPU cores. | c, console (text based), modeling, monte carlo, optical imaging, posix/unix-like |
is listed by: NeuroImaging Tools and Resources Collaboratory (NITRC) has parent organization: SourceForge |
GNU General Public License | nlx_155810 | http://www.nitrc.org/projects/mmc | SCR_006950 | Mesh-based Monte Carlo | 2026-08-01 12:10:52 | 0 | ||||||
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goCognitive Resource Report Resource Website |
goCognitive (RRID:SCR_006154) | goCognitive | material resource, assessment test provider | Free access to materials for students, educators, and researchers in cognitive psychology and cognitive neuroscience. Currently there are about a dozen demonstrations and more than 30 videos that were produced over the last two years. The basic philosophy of goCognitive rests on the assumption that easy and free access to high-quality content will improve the learning experience of students and will enable more students to enjoy the field of cognitive psychology and cognitive neuroscience. There are a few parts of goCognitive that are only available to registered users who have provided their email address, but all of the online demonstrations and videos are accessible to the everyone. Both new demonstrations and new video interviews will continually be added to the site. Manuals for each of the demonstration are being created and available as pdf files for download. Most of the demonstrations are pretty straightforward - but in some cases, especially if you would like to collect data - it might be a good idea to look over the manual. There are different ways in which you can get involved and contribute to the site. Your involvement can range from sending us feedback about the demonstrations and videos, suggestions for new materials, or the simple submission of corrections, to the creation or publication of demonstrations and videos that meet our criteria. Down the road we will make the submission process easier, but for now please contact swerner (at) uidaho dot edu for more information. NSF student grant Undergraduate students can apply through goCognitive for an $1,100 grant to co-produce a new video interview with a leading researcher in the field of cognitive neuroscience. The funding has been provided by the National Science Foundation. | educational tool, education, cognitive neuroscience, interview, demonstration, cognitive psychology, manual, memory, working memory, language processing, neuroscience, long-term memory, linguistics, attention, synesthesia, visual perception, auditory processing, blindspot, change blindness, change detection, declarative memory, dichotic listening, student, educator, researcher, quiz |
is used by: NIF Data Federation is used by: Integrated Videos has parent organization: University of Idaho; Idaho; USA |
Association for Psychological Science ; University of Idaho; Idaho; USA ; NSF ; State of Idaho Board of Education |
Free, A few parts are only available to registered users, The community can contribute to this resource | nlx_151647 | SCR_006154 | GoCognitive - Educational tools for cognitive neuroscience, Go Cognitive | 2026-08-01 12:10:39 | 0 | ||||||
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BioMail Resource Report Resource Website 1+ mentions |
BioMail (RRID:SCR_008174) | software resource, software application | BioMail is a small web-based application for medical researchers, biologists, and anyone who wants to know the latest information about a disease or a biological phenomenon. It is written to automate searching for recent scientific papers in the PubMed Medline database. BioMail is free and will stay free. What does BioMail do? Periodically BioMail does a user-customized Medline search and sends all matching articles recently added to Medline to the users'' e-mail address. HTML-formatted e-mails generated by BioMail can be used to view selected references in medline format (compatible with most reference manager programs). Why is BioMail helpful? If you use Medline, it may be hard to remember when you did your last search. Often you must scan titles you have already seen to be certain you didn''t miss an important reference. BioMail will perform routine searches for you. This program alerts users to all new papers in their fields automatically. It also helps the user to ''refine'' search patterns once and for all. There is no need to wonder: ''What was that great search pattern I used last Saturday?''. All patterns are safe in the database and can be accessed, tuned, or deleted any time. It is also useful for countries where access to the Internet is not yet widely available. If a person has a permanent e-mail address, but only sporadic www access, she/he only needs to fill out a BioMail form once and then will receive new references from Medline continually. | articles, journals, medline interface | has parent organization: SourceForge | nif-0000-21059 | SCR_008174 | BioMail | 2026-08-01 12:10:51 | 1 | |||||||||
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RVTESTS Resource Report Resource Website 50+ mentions |
RVTESTS (RRID:SCR_007639) | RVTESTS | software resource, software application | Software application (entry from Genetic Analysis Software) | gene, genetic, genomic, c++ | is listed by: Genetic Analysis Software | nlx_154603 | SCR_007639 | Rare Variants TESTS | 2026-08-01 12:10:40 | 86 | ||||||||
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Los Angeles Family and Neighborhood Survey Resource Report Resource Website 1+ mentions |
Los Angeles Family and Neighborhood Survey (RRID:SCR_008923) | L.A.FANS, LA FANS | biomaterial supply resource, material resource | A dataset of a panel study of a representative sample of all neighborhoods and households in Los Angeles County, with poor neighborhoods and families with children oversampled, for investigating the social and economic determinants of health and race and ethnic disparities. The study follows neighborhoods over time, as well as children and families. Two waves have been conducted to date, in 2000-2001 (L.A.FANS 1) and again beginning in 2006 through early 2009 (L.A. FANS 2). L.A.FANS-2 will significantly enhance the utility of the L.A.FANS data for studies of adult health disparities by: 1) Replicating self-reported health measures from L.A.FANS-1 and collecting new self-reports on treatment, health behaviors, functional limitations, quality and quantity of sleep, anxiety, health status vignettes, and changes in health status since the first interview; 2) Collecting physiological markers of disease and health status, including diabetes, hypertension, obesity, lung function, immune function, and cardiovascular disease; and 3) Expanding the data collected on adults'' work conditions, stressful experiences, and social ties. Wherever possible, L.A.FANS uses well-tested questions or sections from national surveys, such as the Health and Retirement Study (HRS), Panel Study of Income Dynamics (PSID), National Longitudinal Surveys (NLS), and National Health Interview Survey (NHIS), and other urban surveys, such as the Project on Human Development in Chicago Neighborhoods, to facilitate comparisons. Data Availability: Public use data, study design, and questionnaire content from L.A.FANS are available for downloading. Researchers can also apply for a restricted use version of the L.A.FANS-1 data that contain considerable contextual and geographically-referenced information. Application procedures are described at the project Website. L.A.FANS-2 fieldwork was completed at the end of 2008. The PIs anticipate L.A.FANS-2 public use data will be released in summer 2009. * Dates of Study: 2000-2008 * Study Features: Longitudinal, Minority Oversamples, Anthropometric Measures, Biospecimens * Sample Size: ** 2000-1: 2,548 (L.A.FANS 1) ** 2006-8: ~3,600 (L.A.FANS 2) Link: * ICPSR: http://www.icpsr.umich.edu/icpsrweb/ICPSR/studies/00172 | child, educational achievement, education, achievement, neighborhood, adult, adolescent, los angeles, california, family, longitudinal, minority, anthropometric measure, biospecimen, policy, social, economic, health, race, ethnic disparity, treatment, health behavior, functional limitation, sleep, anxiety, health status, interview, questionnaire |
is listed by: One Mind Biospecimen Bank Listing is listed by: Inter-university Consortium for Political and Social Research (ICPSR) has parent organization: University of California at Los Angeles; California; USA |
Aging | NICHD ; NIA ; NIEHS ; Office of Behavioral and Social Sciences Research ; Los Angeles County |
Public: We offer Public Use Data and four versions of Restricted Data. | nlx_151849 | SCR_008923 | Los Angeles Family and Neighborhood Survey (L.A.FANS) | 2026-08-01 12:10:52 | 1 | |||||
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HAPLO 1 Resource Report Resource Website |
HAPLO 1 (RRID:SCR_009058) | HAPLO 1 | software resource, software application | THIS RESOURCE IS NO LONGER IN SERVICE. Documented on May 16,2023. Software application that assigns each person the haplotype with the highest conditional probability using Elston-Stewart algorithm (entry from Genetic Analysis Software) | gene, genetic, genomic, fortran 77, (ansi standard), unix, sunos, solaris, hp | is listed by: Genetic Analysis Software | THIS RESOURCE IS NO LONGER IN SERVICE | nlx_154039 | SCR_009058 | Haplotyping with computation of conditional probabilities | 2026-08-01 12:10:55 | 0 | |||||||
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KI Biobank - ALF Resource Report Resource Website |
KI Biobank - ALF (RRID:SCR_008880) | KI Biobank - ALF | biomaterial supply resource, material resource | THIS RESOURCE IS NO LONGER IN SERVICE, documented August 23, 2016. The aim of the study is to improve the understanding of psychiatric co-morbidity and personality traits as a means to improving prevention and treatment for women with hereditary vulnerability to develop alcohol and / or drug dependence. In depth phenotypic assessment through structured interviews with women with alcohol or drug abuse in order to assess history, psychiatric morbidity and personality traits potentially related to environmental and/or hereditary alcoholism. Association studies of polymorphic markers in candidate genes. Blood samples and interviews performs on 200 women with alcohol dependents to examine mental illness and specific personality characteristics associated to environment and/or hereditary form of alcoholism. Blood samples are also collected from 200 healthy women which functions as controls. | alcohol abuse, woman, genetics, drug abuse, personality trait, co-morbidity, prevention, treatment, environment, gene, interview, alcoholism, healthy, alcohol abuse, phenotype |
is listed by: One Mind Biospecimen Bank Listing has parent organization: Karolisnka Biobank |
Alcoholism, Psychiatric disease, Normal control, Alcohol dependence, Drug dependence | THIS RESOURCE IS NO LONGER IN SERVICE | nlx_149509 | SCR_008880 | Alcohol abuse among women, Alcohol abuse among women: improved understanding of psychiatric co-morbidity and personality traits as a basis for better treatment. | 2026-08-01 12:10:52 | 0 | ||||||
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scrible Resource Report Resource Website |
scrible (RRID:SCR_008882) | scrible | software resource, software application | We''re bringing Web-based research into the Internet Era by empowering people to mark up web pages in the browser and manage and collaborate on them online. And that''s just the start... We''ve got much more planned in a variety of areas to help people manage the mounds of info they''re pulling off the Web everyday. Simply drag the scrible bookmarklet to your browser''s Bookmarks toolbar. Click it later to mark up, save or share web pages. Even though the world uses the Internet to research nearly everything for work, school and home (job postings, press releases, Wikipedia articles, medical info, etc.), most folks still use old-school ways of annotating, organizing and sharing online info (printing to mark by hand, copying/pasting into Word, etc.). It''s archaic, laborious and a waste of time. We''re changing that. A bookmarklet is a bookmarked link that, when clicked, adds functionality to your browser. When the scrible Bookmarklet is clicked, it loads the scrible Toolbar atop the current webpage you''re viewing. Adding the scrible Bookmarklet to your browser is a breeze. Simply drag it to your browser''s Bookmarks Toolbar. | annotate, annotation, bookmarklet | NSF | Free | nlx_149634 | SCR_008882 | 2026-08-01 12:10:54 | 0 | ||||||||
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SCOUT Resource Report Resource Website 10+ mentions |
SCOUT (RRID:SCR_009054) | SCOUT | software resource, software application | Software program for conducting combined association analysis of triads and unrelated subjects (entry from Genetic Analysis Software) | gene, genetic, genomic, fortran (cvf 6.6) with imsl routines, ms-windows, (2000/xp) | is listed by: Genetic Analysis Software | nlx_154034 | SCR_009054 | 2026-08-01 12:10:52 | 40 |
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The NIDDK Information Network (dkNET) serves the needs of basic and clinical investigators by providing seamless access to large pools of data and research resources relevant to the mission of The National Institute of Diabetes Digestive and Kidney Diseases (NIDDK). dkNET is hosted at University of California San Diego, and is supported by NIH NIDDK grant U24DK097771.
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