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| Resource Name | Proper Citation | Abbreviations | Resource Type |
Description |
Keywords | Resource Relationships | |||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
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TaxonomyTree Resource Report Resource Website |
TaxonomyTree (RRID:SCR_024090) | software resource, software library, software toolkit | Software library used by other RDP tools.TaxonomyTree building and traversal utility classes. | RDP tools, taxonomy tree building and traversal utility classes, | is listed by: Debian | Free, Available for download, Freely available, | https://sources.debian.org/src/librdp-taxonomy-tree-java/ | SCR_024090 | librdp-taxonomy-tree-java | 2026-08-01 12:08:52 | 0 | ||||||||
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Sort-Key-Top Resource Report Resource Website |
Sort-Key-Top (RRID:SCR_024092) | software resource, software library, software toolkit | Functions available from this module select the top n elements from a list using several common orderings and custom key extraction procedures. | select the top n elements from a list, custom key extraction procedures, | is listed by: Debian | Free, Available for download, Freely available, | https://sources.debian.org/src/libsort-key-top-perl/ | SCR_024092 | libsort-key-top-perl, Sort-Key-Top - select and sort top n elements | 2026-08-01 12:08:57 | 0 | ||||||||
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libStatGen Resource Report Resource Website |
libStatGen (RRID:SCR_024093) | software resource, software library, software toolkit | Software library as set of classes for creating statistical genetic programs. | creating statistical genetic programs | is listed by: Debian | Free, Available for download, Freely available, | https://sources.debian.org/src/libstatgen/, https://github.com/statgen/libStatGen | SCR_024093 | C++ Library: libStatGen, libstatgen | 2026-08-01 12:08:46 | 0 | ||||||||
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ThreadPool Resource Report Resource Website |
ThreadPool (RRID:SCR_024094) | software resource, software library, software toolkit | Software C++ thread pool library. | C++ thread pool library | is listed by: Debian | Free, Available for download, Freely available, | https://sources.debian.org/src/libthread-pool/ | SCR_024094 | Thread pool, libthread-pool | 2026-08-01 12:08:52 | 0 | ||||||||
|
OpenCFU Resource Report Resource Website 1+ mentions |
OpenCFU (RRID:SCR_024142) | software resource, software library, software toolkit | Software to count cell colonies and other circular objects. Used to facilitate enumeration of colony forming unit. | count cell colonies, enumeration of colony forming unit, | is listed by: Debian | PMID:23457446 | Free, Available for download, Freely available, | OMICS_14951 | https://sources.debian.org/src/opencfu/ | SCR_024142 | opencfu | 2026-08-01 12:08:47 | 4 | ||||||
|
GATB Resource Report Resource Website 1+ mentions |
GATB (RRID:SCR_024024) | software resource, software toolkit | Software genome analysis toolbox with de-Bruijn graph. Library dedicated to genome assembly and analysis. | genome assembly, genome analysis, | is listed by: Debian | PMID:24990603 | Free, Available for download, Freely available | OMICS_04834 | https://sources.debian.org/src/gatb-core/, https://gatb.inria.fr/software/gatb-core/ | SCR_024024 | GATB-CORE, gatb-core, GATB-TOOLS, The Genome Analysis Toolbox with de-Bruijn graph | 2026-08-01 12:08:56 | 3 | ||||||
|
BBHash Resource Report Resource Website |
BBHash (RRID:SCR_023972) | software resource, software library, software toolkit | Software library for building minimal perfect hash function. Designed to handle large scale datasets. | hash function library, large scale datasets, | is listed by: Debian | Free, Available for download, Freely available | https://sources.debian.org/src/bbhash/ | SCR_023972 | bbhash | 2026-08-01 12:08:45 | 0 | ||||||||
|
bambamc Resource Report Resource Website |
bambamc (RRID:SCR_023970) | software resource, software toolkit | Software package contains lightweight C implementation of name collating BAM file input and BAM file output. | C implementation, name collating BAM file input, BAM file output, | is listed by: Debian | Free, Available for download, Freely available | https://sources.debian.org/src/bambamc/ | SCR_023970 | 2026-08-01 12:08:56 | 0 | |||||||||
|
Odil Resource Report Resource Website |
Odil (RRID:SCR_024140) | software resource, software library, software toolkit | Software DICOM library which provides user-friendly C++11 and Python API for different parts of the DICOM standard. | DICOM library, C++11, Python, API, DICOM standard different parts, | is listed by: Debian | Free, Available for download, Freely available, | https://sources.debian.org/src/odil/ | SCR_024140 | odil | 2026-08-01 12:08:58 | 0 | ||||||||
|
bamkit Resource Report Resource Website |
bamkit (RRID:SCR_023969) | software resource, software toolkit | Software tools for common BAM file manipulations. | BAM file manipulations, BAM file, | is listed by: Debian | Free, Available for download, Freely available | https://sources.debian.org/src/bamkit/ | SCR_023969 | 2026-08-01 12:08:51 | 0 | |||||||||
|
Atropos Resource Report Resource Website 1+ mentions |
Atropos (RRID:SCR_023962) | software resource, software application, source code | Software tool for specific, sensitive, and speedy trimming of NGS reads. | speedy trimming of NGS reads, NGS reads, Next Generation Sequencing, | is listed by: Debian | PMID:28875074 | Free, Available for download, Freely available | OMICS_20869 | https://sources.debian.org/src/atropos/ | SCR_023962 | atropos | 2026-08-01 12:08:56 | 3 | ||||||
|
libdivsufsort Resource Report Resource Website 1+ mentions |
libdivsufsort (RRID:SCR_024079) | software resource, software library, software toolkit | Software library that implements lightweight suffix array construction algorithm. Provides C API to construct suffix array and Burrows-Wheeler transformed string from given string over constant size alphabet. The algorithm runs in O(n log n) worst-case time using only 5n+O(1) bytes of memory space, where n is the length of the string. | suffix array construction algorithm, | is listed by: Debian | Free, Available for download, Freely available, | https://sources.debian.org/src/libdivsufsort/ | SCR_024079 | libdivsufsort: A lightweight suffix-sorting library | 2026-08-01 12:08:57 | 1 | ||||||||
|
Miniasm Resource Report Resource Website 10+ mentions |
Miniasm (RRID:SCR_024114) | software resource, software library, software toolkit | Software OLC-based de novo assembler for noisy long reads. | de novo assembler, noisy long reads | is listed by: Debian | Free, Available for download, Freely available, | OMICS_11366 | https://sources.debian.org/src/miniasm/ | SCR_024114 | miniasm | 2026-08-01 12:08:57 | 16 | |||||||
|
libdisorder Resource Report Resource Website |
libdisorder (RRID:SCR_024072) | software resource, software library, software toolkit | Software C library for entropy measurement of byte streams and other data. | C library, entropy measurement of byte streams, C Library, Entropy Measurement, | is listed by: Debian | Free, Available for download, Freely available, | https://sources.debian.org/src/libdisorder/, https://github.com/locasto/libdisorder | SCR_024072 | libdisorder | 2026-08-01 12:08:57 | 0 | ||||||||
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FAST Analysis of Sequences Toolbox Resource Report Resource Website |
FAST Analysis of Sequences Toolbox (RRID:SCR_024074) | FAST | software resource, software toolkit | Software Fast Analysis of Sequences Toolbox (FAST) is a set of UNIX utilities (for example fasgrep, fascut, fashead and fastr) that extends the UNIX toolbox paradigm to bioinformatic sequence records.FAST workflows are designed for serial processing of flatfile biological sequence record databases per-sequence, rather than per-line, through UNIX pipelines. The default data exchange format is multifasta (specifically, a restriction of BioPerl FastA format). FASTQ format is supported. FAST is designed for learnability, interoperability, interface consistency, rapid prototyping, fine-tuned control, and reproducibility. FAST tools expose the power of Perl and BioPerl to users in an easy-to-learn command-line paradigm. | Analysis of sequences, UNIX utilities, UNIX toolbox paradigm to bioinformatic sequence records, serial processing, flatfile biological sequence record databases per-sequence, FASTQ format, learnability, interoperability, interface consistency, rapid prototyping, fine-tuned control, reproducibility | is listed by: Debian | Free, Available for download, Freely available, | https://sources.debian.org/src/libfast-perl/ | SCR_024074 | libfast-perl, Fast Analysis of Sequences Toolbox, FAST - FAST Analysis of Sequences Toolbox, fast | 2026-08-01 12:08:52 | 0 | |||||||
|
MCL Resource Report Resource Website 1+ mentions |
MCL (RRID:SCR_024109) | software resource, software library, software toolkit | Software tool as general purpose cluster algorithm for both weighted and unweighted networks. Unsupervised cluster algorithm for graphs based on simulation of stochastic flow in graphs. Cluster algorithm for graphs. | cluster algorithm for graphs, general purpose cluster algorithm, weighted and unweighted networks, graphs, simulation of stochastic flow in graphs, | is listed by: Debian | PMID:22144159 | https://sources.debian.org/src/mcl/ | SCR_024109 | , Markov Cluster Algorithm, MCL, mcl | 2026-08-01 12:08:52 | 9 | ||||||||
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libminc Resource Report Resource Website |
libminc (RRID:SCR_024086) | software resource, software library, software toolkit | Software core library and API of the Medical Image NetCDF toolkit. | Medical Image NetCDF library | is listed by: Debian | Free, Available for download, Freely available, | https://sources.debian.org/src/libminc/ | SCR_024086 | Medical Image NetCDF library | 2026-08-01 12:08:57 | 0 | ||||||||
|
mmtf-python Resource Report Resource Website 1+ mentions |
mmtf-python (RRID:SCR_024120) | software resource, software library, software toolkit | Software Python implementation of MacroMolecular Transmission Format API, decoder and encoder. Repository holds the Python 2 and 3 compatible API, encoding and decoding libraries. | Python, MacroMolecular Transmission Format API, decoder, encoder, | is listed by: Debian | Free, Available for download, Freely available, | https://sources.debian.org/src/mmtf-python/, https://mmtf.rcsb.org/ | SCR_024120 | 2026-08-01 12:08:46 | 1 | |||||||||
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libqc++ Resource Report Resource Website |
libqc++ (RRID:SCR_024088) | software resource, software library, software toolkit | Software C++11 library for next-gen sequence quality control and assessment. | C++11 library, next-gen sequence quality control and assessment, | is listed by: Debian | Free, Available for download, Freely available, | https://sources.debian.org/src/libqcpp/ | SCR_024088 | libqcpp | 2026-08-01 12:08:57 | 0 | ||||||||
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SSW Library Resource Report Resource Website |
SSW Library (RRID:SCR_024089) | software resource, software library, software toolkit | SIMD Smith-Waterman C/C++ library for use in genomic applications. SSW is a fast implementation of the Smith-Waterman algorithm, which uses the Single-Instruction Multiple-Data (SIMD) instructions to parallelize the algorithm at the instruction level. SSW library provides an API that can be flexibly used by programs written in C, C++ and other languages. | Smith-Waterman algorithm, C/C++ library, genomic applications, Single-Instruction Multiple-Data, parallelize algorithm at instruction level, | is listed by: Debian | PMID:24324759 | Free, Available for download, Freely available, | OMICS_20525 | https://sources.debian.org/src/libssw/ | SCR_024089 | , SIMD Smith-Waterman Library, libssw, Complete-Striped-Smith-Waterman-Library | 2026-08-01 12:08:46 | 0 |
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The NIDDK Information Network (dkNET) serves the needs of basic and clinical investigators by providing seamless access to large pools of data and research resources relevant to the mission of The National Institute of Diabetes Digestive and Kidney Diseases (NIDDK). dkNET is hosted at University of California San Diego, and is supported by NIH NIDDK grant U24DK097771.
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