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SciCrunch Registry is a curated repository of scientific resources, with a focus on biomedical resources, including tools, databases, and core facilities - visit SciCrunch to register your resource.

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Resource Name Proper Citation Abbreviations Resource Type Description Keywords Resource Relationships Related Condition Funding Defining Citation Availability Specification URL Alternate IDs Alternate URLs Old URLs Parent Organization Resource ID Authority Synonyms Record Last Update Mentions Count
University of Western Ontario London Ontario Canada Physiology and Pharmacology
 
Resource Report
Resource Website
University of Western Ontario London Ontario Canada Physiology and Pharmacology (RRID:SCR_007541) UWO Department of Physiology and Pharmacology data or information resource, department portal, organization portal, portal Research-based medical science department of physiology and pharmacology in the Schulich School of Medicine and Dentistry at the University of Western Ontario that focus on biological processes from the cellular-molecular level to the integrative-systemic level, and on the effects of drugs and environmental agents on these processes. Their areas of research excellence include the physiology and pharmacology of the cardiovascular, neural, reproductive, endocrine and musculoskeletal systems. Several faculty work in the area of developmental biology related to these organ systems. Faculty members in this Department are leaders in nationally-funded collaborative research programs studying skeletal / bone development and biology, heart and vascular biology, cell communication and gap junctions, neural control of vision and movement, and osteoarthritis and pain. Funding from several large infrastructure grants from both national and provincial governments has facilitated the development of state-of-the-art research laboratories and core facilities. physiology, pharmacology, toxicology has parent organization: Western University; Ontario; Canada nif-0000-02287 http://www.physpharm.med.uwo.ca/, http://www.uwo.ca/physpharm/ SCR_007541 SciCrunch Registry 2026-09-26 02:14:19 0
Psychology Post-doctoral Training Program, US Department of Veterans affairs, Salt Lake City, UT
 
Resource Report
Resource Website
Psychology Post-doctoral Training Program, US Department of Veterans affairs, Salt Lake City, UT (RRID:SCR_008076) data or information resource, funding resource, job resource, organization portal, portal, postdoctoral program resource, training resource This web site is an overview of the post-doctoral psychology training program at the VA Salt Lake City Health Care System (VA SLC HCS). Its purpose is to help prospective psychology post-docs learn about the training and professional growth opportunities that are available. The VA Salt Lake City Health Care System postdoctoral fellowship is a full-time, 12-month continuous appointment focused on specialty training in the evaluation and treatment of veterans with Post-Traumatic Stress Disorder. Postdoctoral Fellows will be active members of two interdisciplinary treatment teams: - The PTSD Clinical Team through the Mental Health Department - The Polytrauma Team through the Physical Medicine and Rehabilitation Department. Fellows will also provide community outreach to returning veterans from Afghanistan and Iraq. Especially relevant to the VA Mental Health Strategic Plan, psychological services are provided within the complementary areas of emotional trauma (e.g., military combat, military sexual trauma), physical trauma (e.g., TBI, orthopedic injuries), substance abuse, and couples/family discord, primarily within the OEF/OIF veteran population. Sponsors: This work is funded by the US Department of Veterans Affairs, Salt Lake City. emotional trauma, fellowship, injury, internship, military combat, military sexual trauma, opportunity, orthopedic, physical trauma, polytrauma, post-doctoral, post-traumatic stress disorder, program, psychology, substance abuse, tbi, training nif-0000-10540 SCR_008076 SciCrunch Registry USDVA Training Programs 2026-09-26 02:14:22 0
University of Washington Integrated Brain Project
 
Resource Report
Resource Website
1+ mentions
University of Washington Integrated Brain Project (RRID:SCR_008075) controlled vocabulary, data or information resource, ontology, software resource The UW Integrated Brain Project is one project within the national Human Brain Project, a national multi-agency effort to develop informatics tools for managing the exploding amount of information that is accumulating about the human brain. The objective of the UW Integrated Brain Project effort is to organize and integrate distributed functional information about the brain around the structural information framework that is the long term goal of our work. This application therefore extends the utility of the Digital Anatomist Project by using it to organize non-structural information. The initial driving neuroscience problem that is being addressed is the management, visualization and analysis of cortical language mapping data. In recent years, advances in imaging technology such as PET and functional MRI have allowed researchers to observe areas of the cortex that are activated when the subject performs language tasks. These advances have greatly accelerated the amount of data available about human language, but have also emphasized the need to organize and integrate the sometimes contradictory sources of data, in order to develop theories about language organization. The hypothesis is that neuroanatomy is the common substrate on which the diverse kinds of data can be integrated. A result of the work done by this project is a set of software tools for generating a 3-D reconstruction of the patient''s own brain from MRI, for mapping functional data to this reconstruction, for normalizing individual anatomy by warping to a canonical brain atlas and by annotating data with terms from an anatomy ontology, for managing individual lab data in local laboratory information systems, for integrating and querying data across separate data management systems, and for visualizing the integrated results. Sponsors: This Human Brain Project research is funded jointly by the National Institute on Deafness and Other Communication Disorders, the National Institute of Mental Health, and the National Institute on Aging. functional mri, anatomy, brain, imaging, neuroanatomy, neuroscience, open source license, pet, technology Aging nif-0000-10536 SCR_008075 SciCrunch Registry UW Brain Project 2026-09-26 02:14:22 1
Gladstone Institute of Neurological Disease
 
Resource Report
Resource Website
1+ mentions
Gladstone Institute of Neurological Disease (RRID:SCR_008072) data or information resource, job resource, organization portal, portal, training resource GIND provides a highly interactive academic environment and state-of-the-art research facilities that are ideal for training in neuroscience and biomedical research. GIND Investigators hold university appointments at UCSF and participate in educational activities, including the teaching and training of graduate students and postdoctoral fellows. Additionally, GIND is actively engaged in efforts to translate scientific discoveries into better treatments for major diseases of the nervous system. Sponsors: Support for GIND comes from the University of California at San Francisco. biomedical, disease, nervous system, neuroscience, research, treatment is related to: Collaboratory of AIDS Researchers for Eradciation (CARE) nif-0000-10522 SCR_008072 SciCrunch Registry GIND 2026-09-26 02:14:22 2
Multimodal Imaging Laboratory
 
Resource Report
Resource Website
Multimodal Imaging Laboratory (RRID:SCR_008071) MMIL data or information resource, laboratory portal, organization portal, portal An interdisciplinary group of scientists and clinicians who study the human brain using a variety of imaging, recording, and computational techniques. Their primary goal is to bridge non-invasive imaging technologies to the underlying neurophysiology of brain neuronal circuits for a better understanding of healthy human brain function, and mechanisms of disruption of this function in diseases such as Alzheimer's, epilepsy and stroke. The other goal of the MMIL is to develop and apply advanced imaging techniques to understanding the human brain and its disorders. In order to ground these methodological developments in their underlying neurobiology, invasive studies in humans and animals involving optical and micro physiological measures are also performed. These methodologies are applied to understanding normal function in sleep, memory and language, development and aging, and diseases such as dementia, epilepsy and autism. dti, eeg, epilepsy, fmri, function, aging, alzheimer's, autism, brain, dementia, development, disease, disorder, human, mechanism, memory, microphysiological, neurobiology, neuronal circuit, neurophysiology, noninvasive methodology, pet, sleep, stroke, structural mri, language, meg, structural mri, meg has parent organization: University of California at San Diego; California; USA
is parent organization of: Pediatric Imaging Neurocognition and Genetics
Aging nif-0000-10521 SCR_008071 SciCrunch Registry 2026-09-26 02:14:22 0
RSEG
 
Resource Report
Resource Website
10+ mentions
RSEG (RRID:SCR_007695) RSEG software resource Software package aimed to analyze ChIP-Seq data, especially for identifying genomic regions and their boundaries marked by diffusive histone modification markers, such as H3K36me3 and H3K27me3. is listed by: OMICtools
has parent organization: University of Southern California; Los Angeles; USA
PMID:21325299 Free OMICS_00459 SCR_007695 SciCrunch Registry 2026-09-26 02:14:20 14
Laboratory of Molecular Neuroscience, University of Oslo
 
Resource Report
Resource Website
1+ mentions
Laboratory of Molecular Neuroscience, University of Oslo (RRID:SCR_008097) UiO LMN data or information resource, portal, topical portal A laboratory that investigates the molecular mechanisms involved in the development of acute and chronic neurodegenerative disease, with a focus on the role of glutamate excitotoxicity. It aims at unraveling the molecular basis for cell death and edema development in stroke, and explores the pathophysiology of Alzheimer's disease and temporal lobe epilepsy. The main objective of the LMN is to advance understanding of the role of glutamate, as a transmitter substance in the normal brain and as a mediator of excitotoxicity in pathological conditions such as stroke. To this end the LMN employs several vital and nonvital imaging techniques. Model systems includes organotypic slice cultures and transgenic animals. An important focus of the LMN is to explore the role of DNA damage and repair in the pathogenesis of neurodegenerative disease. LMN is also engaged in research on molecular mechanism underlying brain edema, epilepsy, and Alzheimer's disease. epilepsy, excitotoxicity, acute, alzheimer's disease, brain, brain edema, cell death, chronic, damage, dna, glutamate, imaging, model systems, molecular, molecular mechanism, neurodegenerative disease, neuroprotective, neuroscience, repair, stroke, transmitter has parent organization: University of Oslo; Oslo; Norway nif-0000-11675 SCR_008097 SciCrunch Registry University of Oslo LMN 2026-09-26 02:14:22 2
University of Southern California; Los Angeles; USA
 
Resource Report
Resource Website
1+ mentions
University of Southern California; Los Angeles; USA (RRID:SCR_008093) USC university American private research university in Los Angeles, California. Founded in 1880, it is the oldest private research university in California. USC has historically educated a large number of the nation's business leaders and professionals. private, research, university, American is related to: Alzheimers Disease Genetics Consortium
is related to: Clinical and Translational Science Awards Consortium
is related to: The Pancreatic Beta-Cell Consortium
is parent organization of: Wavelet Analysis of Image Registration
is parent organization of: wANNOVAR
is parent organization of: Gene Aging Nexus
is parent organization of: Bioscholar
is parent organization of: Resource Center for Medical Ultrasonic Transducer Technology
is parent organization of: Brainstorm
is parent organization of: Biomedical Simulations Resource
is parent organization of: Brain Operation Database
is parent organization of: Karma
is parent organization of: PANTHER
is parent organization of: Biomedical Informatics Research Network
is parent organization of: MethPipe
is parent organization of: SPOT - Biological prioritization after a SNP association study
is parent organization of: Bis-SNP
is parent organization of: MLML
is parent organization of: ENIGMA: Enhancing Neuro Imaging Genetics Through Meta-Analysis
is parent organization of: lapdftext
is parent organization of: Brain Architecture Management System
is parent organization of: BIRN Coordinating Center
is parent organization of: University of Southern California Department of Neuroscience
is parent organization of: RSEG
is parent organization of: University of Southern California Brain Project
is parent organization of: Center for Premature Infant Health and Developement
is parent organization of: Sub-Volume Thresholding Analysis
is parent organization of: jViewbox
is parent organization of: MultiPhase-SEG
is parent organization of: LONI Java Image I/O Plugins
is parent organization of: DualSurfaceMin
is parent organization of: Charged Fluid Model for Brain Image Segmentation
is parent organization of: CpG Island Searcher
is parent organization of: Longitudinal Study of Generations
is parent organization of: Biomarker Network
is parent organization of: Nihon University Japanese Longitudinal Study of Aging
is parent organization of: PhenoExplorer
is parent organization of: Piranha
is parent organization of: USC Flow Cytometry Core
is parent organization of: University of Southern California School of Pharmacy Lentiviral Laboratory Core Facility
is parent organization of: University of Southern California School of Pharmacy Graduate Programs
is parent organization of: University of Southern California School of Pharmacy Histology Laboratory Core Facility
is parent organization of: University of Southern California School of Pharmacy Translational Research Laboratory
is parent organization of: University of Southern California Epigenome Center Data Production Facility
is parent organization of: USC Stem Cell Core Facility
is parent organization of: University of Southern California Labs and Facilities
is parent organization of: USC Immune Monitoring Core Facility
is parent organization of: USC Cancer Research Informatics Core
is parent organization of: University of Southern California Keck School of Medicine; California; USA
is parent organization of: muliAlignFree
is parent organization of: GPSeq
is parent organization of: CEDER
is parent organization of: W3C Provenance Incubator Group Wiki
is parent organization of: FadE
is parent organization of: PerM
is parent organization of: Clippers
is parent organization of: NIMH Repository and Genomics Resources
is parent organization of: CROP
is parent organization of: NeuroScholar
is parent organization of: GPCR Network
is parent organization of: ENIGMA-DTI Pipeline
is parent organization of: TomoMiner
is parent organization of: MOCA
is parent organization of: TopDom
is parent organization of: NMF Toolbox
is parent organization of: Data Archive BRAIN Initiative
is parent organization of: Mouse Connectome Project
is parent organization of: MethBase
is parent organization of: OntoSoft
is parent organization of: riborex
is parent organization of: PombeX
is parent organization of: University of Southern California CHLA Cellular Imaging Core Facility
is parent organization of: University of Southern California CHLA Extracellular Vesicle Core Facility
is parent organization of: ReproRehab Research Education Course
is parent organization of: Global Alzheimers Association Interaction Network
is parent organization of: USC-SIPI Image Database
has organization facet: Neurodevelopmental MRI Database
grid.42505.36, Wikidata:Q4614, ISNI:0000 0001 2156 6853, Crossref funder ID:100006034, nlx_24939 https://ror.org/03taz7m60 SCR_008093 SciCrunch Registry University of Southern California 2026-09-26 02:14:22 8
Healthcare Common Procedure Coding System
 
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Resource Website
Healthcare Common Procedure Coding System (RRID:SCR_007598) HCPCS controlled vocabulary, data or information resource, ontology Ontology for the healthcare common procedure coding system. umls is listed by: BioPortal nlx_157426 SCR_007598 SciCrunch Registry 2026-09-26 02:14:19 0
University of West Bohemia; Pilsen; Czech Republic
 
Resource Report
Resource Website
University of West Bohemia; Pilsen; Czech Republic (RRID:SCR_008203) UWB university The University of West Bohemia is a university in Pilsen, Czech Republic. It was founded in 1991 and consists of nine faculties. is parent organization of: EEGbase nlx_50579 SCR_008203 SciCrunch Registry 2026-09-26 02:14:23 0
Drug Interaction Knowledge Base Ontology
 
Resource Report
Resource Website
Drug Interaction Knowledge Base Ontology (RRID:SCR_007591) DIKB controlled vocabulary, data or information resource, ontology An evidence taxonomy for pharmacologic studies that, when combined with a set of inclusion criteria, enable drug experts to specify what their confidence in a drug mechanism assertion would be if it were supported by a specific set of evidence. owl is listed by: BioPortal PMID:19435613 nlx_157392 SCR_007591 SciCrunch Registry 2026-09-26 02:14:19 0
VEGA
 
Resource Report
Resource Website
500+ mentions
VEGA (RRID:SCR_007907) VEGA analysis service resource, data analysis service, data or information resource, database, production service resource, service resource Central repository for high quality frequently updated manual annotation of vertebrate finished genome sequence. Human, mouse and zebrafish are in the process of being completely annotated, whereas for other species the annotation is only of specific genomic regions of particular biological interest. The majority of the annotation is from the HAVANA group at the Welcome Trust Sanger Institute. Users can BLAST, search for specific text, export, and download data. Genomes and details of the projects for each species are available through the homepages for human mouse and zebrafish. The website is built upon code from the EnsEMBL (http://www.ensembl.org) project. Some Ensembl features are not available in Vega. From the users point of view perhaps the most significant of these is MartView. However due to their inclusion in Ensembl, Vega human and mouse data can be queried using Ensembl MartView. Vega contains annotation of the human MHC region in eight haplotypes, and the LRC region in three haplotypes. Vega also contains annotation on the Insulin Dependent Diabetes (IDD) regions on non-reference assemblies for mouse. human, mouse, zebrafish, gorilla, wallaby, pig, dog, vertebrate, genome, orfs, FASEB list is listed by: Sequencing of Idd regions in the NOD mouse genome
is related to: Consensus CDS
has parent organization: Wellcome Trust Sanger Institute; Hinxton; United Kingdom
PMID:18003653
PMID:15975227
PMID:15608237
r3d100012575 https://doi.org/10.17616/R3W77X SCR_007907 SciCrunch Registry The Vertebrate Genome Annotation database (VEGA), Vertebrate Genome Annotation, Vertebrate Genome Annotation Database 2026-09-26 02:14:20 765
Retroviral Tagged Cancer Gene Database
 
Resource Report
Resource Website
10+ mentions
Retroviral Tagged Cancer Gene Database (RRID:SCR_007908) RTCGD data or information resource, database THIS RESOURCE IS NO LONGER IN SERVICE. Documented on May 12,2023. Database of high throughput insertional mutagenesis screening projects of retroviral and transposon insertional mutagenesis in mouse tumors. Information in the RTCGD is obtained from sequence comparison by using public databases UCSC genome mm9 browser. Data based on previous genome assembly mm8 is also available at RTCGD mm8. MCGP has developed three web search tools including Easy Search to query proviral integration sites using mouse gene symbol of gene name; Model Search to obtain RIS information based on tumor models and/or tumor types; Interaction Search to find gene-to-gene interaction. It displays the list of genes which reside in the same tumor to your gene of interest. insertional mutagenesis screening, retroviral and transposon insertional mutagenesis, mouse tumors, has parent organization: NCI-Frederick
has parent organization: National Cancer Institute
THIS RESOURCE IS NO LONGER IN SERVICE nif-0000-03429, SCR_008568, nif-0000-31455 http://rtcgd.ncifcrf.gov/ SCR_007908 SciCrunch Registry RTCGD - Retroviral Tagged Cancer Gene Database 2026-09-26 02:14:20 11
Congenital Heart Defects Ontology
 
Resource Report
Resource Website
50+ mentions
Congenital Heart Defects Ontology (RRID:SCR_007584) CHD controlled vocabulary, data or information resource, ontology An ontology that describes the Congenital Heart Defects data. owl is listed by: BioPortal Congenital Heart Defect nlx_157376 SCR_007584 SciCrunch Registry 2026-09-26 02:14:19 61
AraCyc
 
Resource Report
Resource Website
50+ mentions
AraCyc (RRID:SCR_008109) data or information resource, data repository, database, service resource, storage service resource Curated species-specific database present at the Plant Metabolic Network. It has a large number of experimentally supported enzymes and metabolic pathways, but it also houses a substantial number of computationally predicted enzymes and pathways. enzyme, gene, arabidopsis thaliana, biochemical, pathway, reaction, metabolism, metabolic pathway, data set, data analysis service, web service, FASEB list is used by: Arabidopsis Reactome
is listed by: 3DVC
has parent organization: Plant Metabolic Network
NSF PMID:12805578
PMID:15888675
The community can contribute to this resource nif-0000-20811 http://www.arabidopsis.org/biocyc/index.jsp, http://www.plantcyc.org SCR_008109 SciCrunch Registry Arabidopsis enzymes and biochemical pathways database 2026-09-26 02:14:22 69
ActiveDriver
 
Resource Report
Resource Website
10+ mentions
ActiveDriver (RRID:SCR_008104) ActiveDriver data analysis software, data processing software, sequence analysis software, software application, software resource A statistical method for interpreting variations in protein sequence (e.g. coding SNPs in the population, SNVs in cancer genomes) in the context of protein post-translational signaling modifications. Protein sequence variation, variation interpretation, protein sequence, protein post-translational signaling modifications, bio.tools is listed by: OMICtools
is listed by: Debian
is listed by: bio.tools
Free, Available for download, Freely available biotools:ActiveDriver, OMICS_00140 http://reimandlab.org/software/activedriver/, https://cran.r-project.org/web/packages/ActiveDriver/ActiveDriver.pdf, https://bio.tools/ActiveDriver SCR_008104 SciCrunch Registry 2026-09-26 02:14:22 27
ResearchCrossroads Funding Opportunities Database
 
Resource Report
Resource Website
ResearchCrossroads Funding Opportunities Database (RRID:SCR_007920) ResearchCrossroads Funding funding resource A database of funding opportunities from both public and private funding sources. Search by keyword and the funding opportunities matching your criteria are displayed. Click on the funding title to view the complete record. You may also add opportunities to the ResearchCrossroads database if you have registered. research funding, research money, database has parent organization: ResearchCrossroads SCR_007920 SciCrunch Registry Research Crossroads Funding 2026-09-26 02:14:20 0
BRIG
 
Resource Report
Resource Website
500+ mentions
BRIG (RRID:SCR_007802) BRIG software resource A cross-platform (Windows/Mac/Unix) application that can display circular comparisons between a large number of genomes, with a focus on handling genome assembly data. bio.tools is listed by: OMICtools
is listed by: Debian
is listed by: bio.tools
has parent organization: SourceForge
DOI:10.1186/1471-2164-12-402 OMICS_00929, biotools:brig https://bio.tools/brig, https://sources.debian.org/src/brig/ SCR_007802 SciCrunch Registry BLAST Ring Image Generator 2026-09-26 02:14:20 561
Nerve Tissue
 
Resource Report
Resource Website
Nerve Tissue (RRID:SCR_008219) NUS Nerve Tissue data or information resource, image collection THIS RESOURCE IS NO LONGER IN SERVICE, documented on March 18, 2013. 15 annotated electron micrographs of different parts of the nervous system. Different nerve tissues are depicted. electron micrograph, ganglion, anterior, astrocyte, axon, cell, cerebellum, corpuscle, cytoplasm, dendritic, granule, horn, lipofuscin, microglial, micrograph, motor neuron, myelinated, nerve, neuron, neuron microscopy, oligodendrocyte, osmic acid, pacinian, peripheral, sciatic, sensory, spinal cord, synapse, terminal, tissue, unmyelinated, nervous system, nerve tissue has parent organization: Yong Loo Lin School of Medicine; Singapore; Singapore THIS RESOURCE IS NO LONGER IN SERVICE nif-0000-21298 SCR_008219 SciCrunch Registry 2026-09-26 02:14:23 0
ABX Guide
 
Resource Report
Resource Website
1+ mentions
ABX Guide (RRID:SCR_008214) ABX Guide continuing medical education, data or information resource, database, training resource Concise, clinically useful information for diagnosing, managing and treating infectious diseases in adults; however it does cover some pediatric topics including vaccines. It is designed for primary care providers and other non-infectious disease specialists as a tool that can be used at the point of care to assist in prescribing antibiotics. drug interaction, drug, evaluation, antibiotic, clinical, contraindication, diagnosis, disease, disease state, dosing, immunization, indication, infectious disease, literature review, pathogen, pharmacokinetics, side effect, treatment, vaccine, antibiotic, adult, pediatric, vaccine, point of care is related to: Johns Hopkins Point of Care Guides
is related to: Johns Hopkins University; Maryland; USA
Infectious disease Available for purchase nif-0000-21292 SCR_008214 SciCrunch Registry Johns Hopkins ABX Guide, Johns Hopkins Antibiotic Guide 2026-09-26 02:14:23 4

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