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SciCrunch Registry is a curated repository of scientific resources, with a focus on biomedical resources, including tools, databases, and core facilities - visit SciCrunch to register your resource.
| Resource Name | Proper Citation | Abbreviations | Resource Type |
Description |
Keywords | Resource Relationships | ||||||||||||||
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University of Western Ontario London Ontario Canada Physiology and Pharmacology Resource Report Resource Website |
University of Western Ontario London Ontario Canada Physiology and Pharmacology (RRID:SCR_007541) | UWO Department of Physiology and Pharmacology | data or information resource, department portal, organization portal, portal | Research-based medical science department of physiology and pharmacology in the Schulich School of Medicine and Dentistry at the University of Western Ontario that focus on biological processes from the cellular-molecular level to the integrative-systemic level, and on the effects of drugs and environmental agents on these processes. Their areas of research excellence include the physiology and pharmacology of the cardiovascular, neural, reproductive, endocrine and musculoskeletal systems. Several faculty work in the area of developmental biology related to these organ systems. Faculty members in this Department are leaders in nationally-funded collaborative research programs studying skeletal / bone development and biology, heart and vascular biology, cell communication and gap junctions, neural control of vision and movement, and osteoarthritis and pain. Funding from several large infrastructure grants from both national and provincial governments has facilitated the development of state-of-the-art research laboratories and core facilities. | physiology, pharmacology, toxicology | has parent organization: Western University; Ontario; Canada | nif-0000-02287 | http://www.physpharm.med.uwo.ca/, http://www.uwo.ca/physpharm/ | SCR_007541 | SciCrunch Registry | 2026-09-26 02:14:19 | 0 | ||||||||
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Psychology Post-doctoral Training Program, US Department of Veterans affairs, Salt Lake City, UT Resource Report Resource Website |
Psychology Post-doctoral Training Program, US Department of Veterans affairs, Salt Lake City, UT (RRID:SCR_008076) | data or information resource, funding resource, job resource, organization portal, portal, postdoctoral program resource, training resource | This web site is an overview of the post-doctoral psychology training program at the VA Salt Lake City Health Care System (VA SLC HCS). Its purpose is to help prospective psychology post-docs learn about the training and professional growth opportunities that are available. The VA Salt Lake City Health Care System postdoctoral fellowship is a full-time, 12-month continuous appointment focused on specialty training in the evaluation and treatment of veterans with Post-Traumatic Stress Disorder. Postdoctoral Fellows will be active members of two interdisciplinary treatment teams: - The PTSD Clinical Team through the Mental Health Department - The Polytrauma Team through the Physical Medicine and Rehabilitation Department. Fellows will also provide community outreach to returning veterans from Afghanistan and Iraq. Especially relevant to the VA Mental Health Strategic Plan, psychological services are provided within the complementary areas of emotional trauma (e.g., military combat, military sexual trauma), physical trauma (e.g., TBI, orthopedic injuries), substance abuse, and couples/family discord, primarily within the OEF/OIF veteran population. Sponsors: This work is funded by the US Department of Veterans Affairs, Salt Lake City. | emotional trauma, fellowship, injury, internship, military combat, military sexual trauma, opportunity, orthopedic, physical trauma, polytrauma, post-doctoral, post-traumatic stress disorder, program, psychology, substance abuse, tbi, training | nif-0000-10540 | SCR_008076 | SciCrunch Registry | USDVA Training Programs | 2026-09-26 02:14:22 | 0 | ||||||||||
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University of Washington Integrated Brain Project Resource Report Resource Website 1+ mentions |
University of Washington Integrated Brain Project (RRID:SCR_008075) | controlled vocabulary, data or information resource, ontology, software resource | The UW Integrated Brain Project is one project within the national Human Brain Project, a national multi-agency effort to develop informatics tools for managing the exploding amount of information that is accumulating about the human brain. The objective of the UW Integrated Brain Project effort is to organize and integrate distributed functional information about the brain around the structural information framework that is the long term goal of our work. This application therefore extends the utility of the Digital Anatomist Project by using it to organize non-structural information. The initial driving neuroscience problem that is being addressed is the management, visualization and analysis of cortical language mapping data. In recent years, advances in imaging technology such as PET and functional MRI have allowed researchers to observe areas of the cortex that are activated when the subject performs language tasks. These advances have greatly accelerated the amount of data available about human language, but have also emphasized the need to organize and integrate the sometimes contradictory sources of data, in order to develop theories about language organization. The hypothesis is that neuroanatomy is the common substrate on which the diverse kinds of data can be integrated. A result of the work done by this project is a set of software tools for generating a 3-D reconstruction of the patient''s own brain from MRI, for mapping functional data to this reconstruction, for normalizing individual anatomy by warping to a canonical brain atlas and by annotating data with terms from an anatomy ontology, for managing individual lab data in local laboratory information systems, for integrating and querying data across separate data management systems, and for visualizing the integrated results. Sponsors: This Human Brain Project research is funded jointly by the National Institute on Deafness and Other Communication Disorders, the National Institute of Mental Health, and the National Institute on Aging. | functional mri, anatomy, brain, imaging, neuroanatomy, neuroscience, open source license, pet, technology | Aging | nif-0000-10536 | SCR_008075 | SciCrunch Registry | UW Brain Project | 2026-09-26 02:14:22 | 1 | |||||||||
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Gladstone Institute of Neurological Disease Resource Report Resource Website 1+ mentions |
Gladstone Institute of Neurological Disease (RRID:SCR_008072) | data or information resource, job resource, organization portal, portal, training resource | GIND provides a highly interactive academic environment and state-of-the-art research facilities that are ideal for training in neuroscience and biomedical research. GIND Investigators hold university appointments at UCSF and participate in educational activities, including the teaching and training of graduate students and postdoctoral fellows. Additionally, GIND is actively engaged in efforts to translate scientific discoveries into better treatments for major diseases of the nervous system. Sponsors: Support for GIND comes from the University of California at San Francisco. | biomedical, disease, nervous system, neuroscience, research, treatment | is related to: Collaboratory of AIDS Researchers for Eradciation (CARE) | nif-0000-10522 | SCR_008072 | SciCrunch Registry | GIND | 2026-09-26 02:14:22 | 2 | |||||||||
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Multimodal Imaging Laboratory Resource Report Resource Website |
Multimodal Imaging Laboratory (RRID:SCR_008071) | MMIL | data or information resource, laboratory portal, organization portal, portal | An interdisciplinary group of scientists and clinicians who study the human brain using a variety of imaging, recording, and computational techniques. Their primary goal is to bridge non-invasive imaging technologies to the underlying neurophysiology of brain neuronal circuits for a better understanding of healthy human brain function, and mechanisms of disruption of this function in diseases such as Alzheimer's, epilepsy and stroke. The other goal of the MMIL is to develop and apply advanced imaging techniques to understanding the human brain and its disorders. In order to ground these methodological developments in their underlying neurobiology, invasive studies in humans and animals involving optical and micro physiological measures are also performed. These methodologies are applied to understanding normal function in sleep, memory and language, development and aging, and diseases such as dementia, epilepsy and autism. | dti, eeg, epilepsy, fmri, function, aging, alzheimer's, autism, brain, dementia, development, disease, disorder, human, mechanism, memory, microphysiological, neurobiology, neuronal circuit, neurophysiology, noninvasive methodology, pet, sleep, stroke, structural mri, language, meg, structural mri, meg |
has parent organization: University of California at San Diego; California; USA is parent organization of: Pediatric Imaging Neurocognition and Genetics |
Aging | nif-0000-10521 | SCR_008071 | SciCrunch Registry | 2026-09-26 02:14:22 | 0 | ||||||||
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RSEG Resource Report Resource Website 10+ mentions |
RSEG (RRID:SCR_007695) | RSEG | software resource | Software package aimed to analyze ChIP-Seq data, especially for identifying genomic regions and their boundaries marked by diffusive histone modification markers, such as H3K36me3 and H3K27me3. |
is listed by: OMICtools has parent organization: University of Southern California; Los Angeles; USA |
PMID:21325299 | Free | OMICS_00459 | SCR_007695 | SciCrunch Registry | 2026-09-26 02:14:20 | 14 | ||||||||
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Laboratory of Molecular Neuroscience, University of Oslo Resource Report Resource Website 1+ mentions |
Laboratory of Molecular Neuroscience, University of Oslo (RRID:SCR_008097) | UiO LMN | data or information resource, portal, topical portal | A laboratory that investigates the molecular mechanisms involved in the development of acute and chronic neurodegenerative disease, with a focus on the role of glutamate excitotoxicity. It aims at unraveling the molecular basis for cell death and edema development in stroke, and explores the pathophysiology of Alzheimer's disease and temporal lobe epilepsy. The main objective of the LMN is to advance understanding of the role of glutamate, as a transmitter substance in the normal brain and as a mediator of excitotoxicity in pathological conditions such as stroke. To this end the LMN employs several vital and nonvital imaging techniques. Model systems includes organotypic slice cultures and transgenic animals. An important focus of the LMN is to explore the role of DNA damage and repair in the pathogenesis of neurodegenerative disease. LMN is also engaged in research on molecular mechanism underlying brain edema, epilepsy, and Alzheimer's disease. | epilepsy, excitotoxicity, acute, alzheimer's disease, brain, brain edema, cell death, chronic, damage, dna, glutamate, imaging, model systems, molecular, molecular mechanism, neurodegenerative disease, neuroprotective, neuroscience, repair, stroke, transmitter | has parent organization: University of Oslo; Oslo; Norway | nif-0000-11675 | SCR_008097 | SciCrunch Registry | University of Oslo LMN | 2026-09-26 02:14:22 | 2 | ||||||||
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University of Southern California; Los Angeles; USA Resource Report Resource Website 1+ mentions |
University of Southern California; Los Angeles; USA (RRID:SCR_008093) | USC | university | American private research university in Los Angeles, California. Founded in 1880, it is the oldest private research university in California. USC has historically educated a large number of the nation's business leaders and professionals. | private, research, university, American |
is related to: Alzheimers Disease Genetics Consortium is related to: Clinical and Translational Science Awards Consortium is related to: The Pancreatic Beta-Cell Consortium is parent organization of: Wavelet Analysis of Image Registration is parent organization of: wANNOVAR is parent organization of: Gene Aging Nexus is parent organization of: Bioscholar is parent organization of: Resource Center for Medical Ultrasonic Transducer Technology is parent organization of: Brainstorm is parent organization of: Biomedical Simulations Resource is parent organization of: Brain Operation Database is parent organization of: Karma is parent organization of: PANTHER is parent organization of: Biomedical Informatics Research Network is parent organization of: MethPipe is parent organization of: SPOT - Biological prioritization after a SNP association study is parent organization of: Bis-SNP is parent organization of: MLML is parent organization of: ENIGMA: Enhancing Neuro Imaging Genetics Through Meta-Analysis is parent organization of: lapdftext is parent organization of: Brain Architecture Management System is parent organization of: BIRN Coordinating Center is parent organization of: University of Southern California Department of Neuroscience is parent organization of: RSEG is parent organization of: University of Southern California Brain Project is parent organization of: Center for Premature Infant Health and Developement is parent organization of: Sub-Volume Thresholding Analysis is parent organization of: jViewbox is parent organization of: MultiPhase-SEG is parent organization of: LONI Java Image I/O Plugins is parent organization of: DualSurfaceMin is parent organization of: Charged Fluid Model for Brain Image Segmentation is parent organization of: CpG Island Searcher is parent organization of: Longitudinal Study of Generations is parent organization of: Biomarker Network is parent organization of: Nihon University Japanese Longitudinal Study of Aging is parent organization of: PhenoExplorer is parent organization of: Piranha is parent organization of: USC Flow Cytometry Core is parent organization of: University of Southern California School of Pharmacy Lentiviral Laboratory Core Facility is parent organization of: University of Southern California School of Pharmacy Graduate Programs is parent organization of: University of Southern California School of Pharmacy Histology Laboratory Core Facility is parent organization of: University of Southern California School of Pharmacy Translational Research Laboratory is parent organization of: University of Southern California Epigenome Center Data Production Facility is parent organization of: USC Stem Cell Core Facility is parent organization of: University of Southern California Labs and Facilities is parent organization of: USC Immune Monitoring Core Facility is parent organization of: USC Cancer Research Informatics Core is parent organization of: University of Southern California Keck School of Medicine; California; USA is parent organization of: muliAlignFree is parent organization of: GPSeq is parent organization of: CEDER is parent organization of: W3C Provenance Incubator Group Wiki is parent organization of: FadE is parent organization of: PerM is parent organization of: Clippers is parent organization of: NIMH Repository and Genomics Resources is parent organization of: CROP is parent organization of: NeuroScholar is parent organization of: GPCR Network is parent organization of: ENIGMA-DTI Pipeline is parent organization of: TomoMiner is parent organization of: MOCA is parent organization of: TopDom is parent organization of: NMF Toolbox is parent organization of: Data Archive BRAIN Initiative is parent organization of: Mouse Connectome Project is parent organization of: MethBase is parent organization of: OntoSoft is parent organization of: riborex is parent organization of: PombeX is parent organization of: University of Southern California CHLA Cellular Imaging Core Facility is parent organization of: University of Southern California CHLA Extracellular Vesicle Core Facility is parent organization of: ReproRehab Research Education Course is parent organization of: Global Alzheimers Association Interaction Network is parent organization of: USC-SIPI Image Database has organization facet: Neurodevelopmental MRI Database |
grid.42505.36, Wikidata:Q4614, ISNI:0000 0001 2156 6853, Crossref funder ID:100006034, nlx_24939 | https://ror.org/03taz7m60 | SCR_008093 | SciCrunch Registry | University of Southern California | 2026-09-26 02:14:22 | 8 | |||||||
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Healthcare Common Procedure Coding System Resource Report Resource Website |
Healthcare Common Procedure Coding System (RRID:SCR_007598) | HCPCS | controlled vocabulary, data or information resource, ontology | Ontology for the healthcare common procedure coding system. | umls | is listed by: BioPortal | nlx_157426 | SCR_007598 | SciCrunch Registry | 2026-09-26 02:14:19 | 0 | |||||||||
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University of West Bohemia; Pilsen; Czech Republic Resource Report Resource Website |
University of West Bohemia; Pilsen; Czech Republic (RRID:SCR_008203) | UWB | university | The University of West Bohemia is a university in Pilsen, Czech Republic. It was founded in 1991 and consists of nine faculties. | is parent organization of: EEGbase | nlx_50579 | SCR_008203 | SciCrunch Registry | 2026-09-26 02:14:23 | 0 | ||||||||||
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Drug Interaction Knowledge Base Ontology Resource Report Resource Website |
Drug Interaction Knowledge Base Ontology (RRID:SCR_007591) | DIKB | controlled vocabulary, data or information resource, ontology | An evidence taxonomy for pharmacologic studies that, when combined with a set of inclusion criteria, enable drug experts to specify what their confidence in a drug mechanism assertion would be if it were supported by a specific set of evidence. | owl | is listed by: BioPortal | PMID:19435613 | nlx_157392 | SCR_007591 | SciCrunch Registry | 2026-09-26 02:14:19 | 0 | ||||||||
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VEGA Resource Report Resource Website 500+ mentions |
VEGA (RRID:SCR_007907) | VEGA | analysis service resource, data analysis service, data or information resource, database, production service resource, service resource | Central repository for high quality frequently updated manual annotation of vertebrate finished genome sequence. Human, mouse and zebrafish are in the process of being completely annotated, whereas for other species the annotation is only of specific genomic regions of particular biological interest. The majority of the annotation is from the HAVANA group at the Welcome Trust Sanger Institute. Users can BLAST, search for specific text, export, and download data. Genomes and details of the projects for each species are available through the homepages for human mouse and zebrafish. The website is built upon code from the EnsEMBL (http://www.ensembl.org) project. Some Ensembl features are not available in Vega. From the users point of view perhaps the most significant of these is MartView. However due to their inclusion in Ensembl, Vega human and mouse data can be queried using Ensembl MartView. Vega contains annotation of the human MHC region in eight haplotypes, and the LRC region in three haplotypes. Vega also contains annotation on the Insulin Dependent Diabetes (IDD) regions on non-reference assemblies for mouse. | human, mouse, zebrafish, gorilla, wallaby, pig, dog, vertebrate, genome, orfs, FASEB list |
is listed by: Sequencing of Idd regions in the NOD mouse genome is related to: Consensus CDS has parent organization: Wellcome Trust Sanger Institute; Hinxton; United Kingdom |
PMID:18003653 PMID:15975227 PMID:15608237 |
r3d100012575 | https://doi.org/10.17616/R3W77X | SCR_007907 | SciCrunch Registry | The Vertebrate Genome Annotation database (VEGA), Vertebrate Genome Annotation, Vertebrate Genome Annotation Database | 2026-09-26 02:14:20 | 765 | ||||||
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Retroviral Tagged Cancer Gene Database Resource Report Resource Website 10+ mentions |
Retroviral Tagged Cancer Gene Database (RRID:SCR_007908) | RTCGD | data or information resource, database | THIS RESOURCE IS NO LONGER IN SERVICE. Documented on May 12,2023. Database of high throughput insertional mutagenesis screening projects of retroviral and transposon insertional mutagenesis in mouse tumors. Information in the RTCGD is obtained from sequence comparison by using public databases UCSC genome mm9 browser. Data based on previous genome assembly mm8 is also available at RTCGD mm8. MCGP has developed three web search tools including Easy Search to query proviral integration sites using mouse gene symbol of gene name; Model Search to obtain RIS information based on tumor models and/or tumor types; Interaction Search to find gene-to-gene interaction. It displays the list of genes which reside in the same tumor to your gene of interest. | insertional mutagenesis screening, retroviral and transposon insertional mutagenesis, mouse tumors, |
has parent organization: NCI-Frederick has parent organization: National Cancer Institute |
THIS RESOURCE IS NO LONGER IN SERVICE | nif-0000-03429, SCR_008568, nif-0000-31455 | http://rtcgd.ncifcrf.gov/ | SCR_007908 | SciCrunch Registry | RTCGD - Retroviral Tagged Cancer Gene Database | 2026-09-26 02:14:20 | 11 | ||||||
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Congenital Heart Defects Ontology Resource Report Resource Website 50+ mentions |
Congenital Heart Defects Ontology (RRID:SCR_007584) | CHD | controlled vocabulary, data or information resource, ontology | An ontology that describes the Congenital Heart Defects data. | owl | is listed by: BioPortal | Congenital Heart Defect | nlx_157376 | SCR_007584 | SciCrunch Registry | 2026-09-26 02:14:19 | 61 | ||||||||
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AraCyc Resource Report Resource Website 50+ mentions |
AraCyc (RRID:SCR_008109) | data or information resource, data repository, database, service resource, storage service resource | Curated species-specific database present at the Plant Metabolic Network. It has a large number of experimentally supported enzymes and metabolic pathways, but it also houses a substantial number of computationally predicted enzymes and pathways. | enzyme, gene, arabidopsis thaliana, biochemical, pathway, reaction, metabolism, metabolic pathway, data set, data analysis service, web service, FASEB list |
is used by: Arabidopsis Reactome is listed by: 3DVC has parent organization: Plant Metabolic Network |
NSF | PMID:12805578 PMID:15888675 |
The community can contribute to this resource | nif-0000-20811 | http://www.arabidopsis.org/biocyc/index.jsp, http://www.plantcyc.org | SCR_008109 | SciCrunch Registry | Arabidopsis enzymes and biochemical pathways database | 2026-09-26 02:14:22 | 69 | |||||
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ActiveDriver Resource Report Resource Website 10+ mentions |
ActiveDriver (RRID:SCR_008104) | ActiveDriver | data analysis software, data processing software, sequence analysis software, software application, software resource | A statistical method for interpreting variations in protein sequence (e.g. coding SNPs in the population, SNVs in cancer genomes) in the context of protein post-translational signaling modifications. | Protein sequence variation, variation interpretation, protein sequence, protein post-translational signaling modifications, bio.tools |
is listed by: OMICtools is listed by: Debian is listed by: bio.tools |
Free, Available for download, Freely available | biotools:ActiveDriver, OMICS_00140 | http://reimandlab.org/software/activedriver/, https://cran.r-project.org/web/packages/ActiveDriver/ActiveDriver.pdf, https://bio.tools/ActiveDriver | SCR_008104 | SciCrunch Registry | 2026-09-26 02:14:22 | 27 | |||||||
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ResearchCrossroads Funding Opportunities Database Resource Report Resource Website |
ResearchCrossroads Funding Opportunities Database (RRID:SCR_007920) | ResearchCrossroads Funding | funding resource | A database of funding opportunities from both public and private funding sources. Search by keyword and the funding opportunities matching your criteria are displayed. Click on the funding title to view the complete record. You may also add opportunities to the ResearchCrossroads database if you have registered. | research funding, research money, database | has parent organization: ResearchCrossroads | SCR_007920 | SciCrunch Registry | Research Crossroads Funding | 2026-09-26 02:14:20 | 0 | |||||||||
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BRIG Resource Report Resource Website 500+ mentions |
BRIG (RRID:SCR_007802) | BRIG | software resource | A cross-platform (Windows/Mac/Unix) application that can display circular comparisons between a large number of genomes, with a focus on handling genome assembly data. | bio.tools |
is listed by: OMICtools is listed by: Debian is listed by: bio.tools has parent organization: SourceForge |
DOI:10.1186/1471-2164-12-402 | OMICS_00929, biotools:brig | https://bio.tools/brig, https://sources.debian.org/src/brig/ | SCR_007802 | SciCrunch Registry | BLAST Ring Image Generator | 2026-09-26 02:14:20 | 561 | ||||||
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Nerve Tissue Resource Report Resource Website |
Nerve Tissue (RRID:SCR_008219) | NUS Nerve Tissue | data or information resource, image collection | THIS RESOURCE IS NO LONGER IN SERVICE, documented on March 18, 2013. 15 annotated electron micrographs of different parts of the nervous system. Different nerve tissues are depicted. | electron micrograph, ganglion, anterior, astrocyte, axon, cell, cerebellum, corpuscle, cytoplasm, dendritic, granule, horn, lipofuscin, microglial, micrograph, motor neuron, myelinated, nerve, neuron, neuron microscopy, oligodendrocyte, osmic acid, pacinian, peripheral, sciatic, sensory, spinal cord, synapse, terminal, tissue, unmyelinated, nervous system, nerve tissue | has parent organization: Yong Loo Lin School of Medicine; Singapore; Singapore | THIS RESOURCE IS NO LONGER IN SERVICE | nif-0000-21298 | SCR_008219 | SciCrunch Registry | 2026-09-26 02:14:23 | 0 | ||||||||
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ABX Guide Resource Report Resource Website 1+ mentions |
ABX Guide (RRID:SCR_008214) | ABX Guide | continuing medical education, data or information resource, database, training resource | Concise, clinically useful information for diagnosing, managing and treating infectious diseases in adults; however it does cover some pediatric topics including vaccines. It is designed for primary care providers and other non-infectious disease specialists as a tool that can be used at the point of care to assist in prescribing antibiotics. | drug interaction, drug, evaluation, antibiotic, clinical, contraindication, diagnosis, disease, disease state, dosing, immunization, indication, infectious disease, literature review, pathogen, pharmacokinetics, side effect, treatment, vaccine, antibiotic, adult, pediatric, vaccine, point of care |
is related to: Johns Hopkins Point of Care Guides is related to: Johns Hopkins University; Maryland; USA |
Infectious disease | Available for purchase | nif-0000-21292 | SCR_008214 | SciCrunch Registry | Johns Hopkins ABX Guide, Johns Hopkins Antibiotic Guide | 2026-09-26 02:14:23 | 4 |
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