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| Resource Name | Proper Citation | Abbreviations | Resource Type |
Description |
Keywords | Resource Relationships | |||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
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AutoHeadFix Resource Report Resource Website |
AutoHeadFix (RRID:SCR_021617) | software resource, source code | Software Python code for automated control of behavioural apparatus and imaging for mice in home cage environment.Part of Homecage Task Training and Mesoscale Imaging system. | Automated control, behavioural apparatus, imaging for mice, home cage environment, OpenBehavior |
is listed by: OpenBehavior is related to: Homecage Task Training and Mesoscale Imaging project |
DOI:10.7554/elife.55964 | Free, Available for download, Freely Available | https://edspace.american.edu/openbehavior/project/training-mesoscale-imaging/ | SCR_021617 | 2026-09-05 06:34:21 | 0 | ||||||||
|
craniobot Resource Report Resource Website |
craniobot (RRID:SCR_021609) | software resource, software toolkit, source code | Software tool as part of Craniobot system.Generates, sends, and receives commands to communicate with the Craniobot. | Software resource, OpenBehavior |
is listed by: OpenBehavior is related to: Craniobot project |
DOI:10.1038/s41598-018-37073-w | Free, Available for download, Freely Available | https://edspace.american.edu/openbehavior/project/craniobot/ | SCR_021609 | craniobot | 2026-09-05 06:34:21 | 0 | |||||||
|
Automated Home-Cage Functional Imaging Resource Report Resource Website |
Automated Home-Cage Functional Imaging (RRID:SCR_021607) | software resource, source code | Software tool as part of Automated Home Cage Functional Imaging system. | Software resource, OpenBehavior |
is listed by: OpenBehavior is related to: Automated Home-Cage Functional Imaging project |
DOI:10.1038/ncomms11611 | Free, Available for download, Freely Available | https://edspace.american.edu/openbehavior/project/automated-home-cage-functional-imaging/ | SCR_021607 | 2026-09-05 06:34:21 | 0 | ||||||||
|
Scintillate Resource Report Resource Website |
Scintillate (RRID:SCR_021531) | software resource, source code | Open source graphical viewer for time series calcium imaging evaluation and pre-processing. | image acquisition, time series calcium imaging evaluation, calcium imaging, |
is listed by: OpenBehavior is related to: Scintillate project |
DOI:10.1016/j.jneumeth.2016.08.010 | Free, Available for download, Freely Available | https://edspace.american.edu/openbehavior/project/scintillate/ | SCR_021531 | 2026-09-05 06:34:21 | 0 | ||||||||
|
flyPAD Resource Report Resource Website 1+ mentions |
flyPAD (RRID:SCR_021522) | software resource, source code | FPGA code for running main board of flyPAD. Code written in VHDL using Quartus 2 web edition software. | FPGA code, running main board of flyPAD, VHDL, Quartus 2, OpenBehavior |
is listed by: OpenBehavior is related to: flyPAD project |
DOI:10.1038/ncomms5560 | Free, Available for download, Freely Available | https://edspace.american.edu/openbehavior/project/optopad-and-flypad/ | SCR_021522 | 2026-09-05 06:34:21 | 1 | ||||||||
|
pyOS-5 Resource Report Resource Website |
pyOS-5 (RRID:SCR_022336) | software resource, source code | Operant Box code | OpenBehavior, neurophysiology |
is listed by: OpenBehavior is related to: pyOS-5 project |
DOI:10.1038/s41598-021-01717-1 | Free, Available for download, Freely available | https://edspace.american.edu/openbehavior/project/pyos-5/ | SCR_022336 | 2026-09-05 06:34:25 | 0 | ||||||||
|
ghostipy Resource Report Resource Website |
ghostipy (RRID:SCR_026231) | 1d time-series analysis software, data analysis software, data processing software, software application, software resource, source code, time-series analysis software | Software signal processing and spectral analysis toolbox designed for local field potential recordings. | OpenBehavior, neuroscience, signal processing, spectral analysis, local field potential recordings, | is listed by: OpenBehavior | DOI:10.1523/ENEURO.0202-21.2021 | Free, Available for download, Freely available | https://edspace.american.edu/openbehavior/project/ghostipy/ | SCR_026231 | 2026-09-05 06:35:16 | 0 | ||||||||
|
SaLSa Resource Report Resource Website |
SaLSa (RRID:SCR_026182) | software resource, software toolkit, source code | Software MATLAB package for analyzing and categorizing behaviors using pose estimation data. Integrates semi-automatic labeling with machine learning, specifically Long Short-Term Memory neural networks, to classify behavioral "syllables” (distinct, repeatable behaviors). Combinatory approach of semi-automatic labeling and long short-term memory to classify behavioral syllables. | OpenBehavior, semi-automatic labeling, long short-term memory, classify behavioral syllables, behavior, pose estimation data, | is listed by: OpenBehavior | PMID:37989587 | Free, Available for download, Freely available | https://edspace.american.edu/openbehavior/project/salsa/ | SCR_026182 | 2026-09-05 06:35:15 | 0 | ||||||||
|
NC4gate Resource Report Resource Website |
NC4gate (RRID:SCR_026445) | software resource, source code | Code for testing and operating NC4gate modules of modular gate system for autonomous control of rodent behavior. Fully customizable gate system that can be used in behavioral experiments involving rodent mazes (T-maze, Y-maze, radial arm, etc.). | OpenBehavior, modular gate system, autonomous control of rodent behavior, behavioral experiments, rodent mazes, | is listed by: OpenBehavior | DOI:10.1101/2024.11.22.624912 | Free, Available for download, Freely available | https://osf.io/uy7ez/, https://edspace.american.edu/openbehavior/project/nc4gate/ | SCR_026445 | 2026-09-05 06:35:22 | 0 | ||||||||
|
ArUco Resource Report Resource Website 10+ mentions |
ArUco (RRID:SCR_026572) | instrument resource, software resource, source code | Automated rodent behavioral scoring system, complete with 3D design files and code/software. System monitors behavioral engagement using open-source software. 3D design files and necessary software has been made available, as well as code that can be used for data analysis. | OpenBehavior, Aruco marker based tracking, pose estimation, rodent behavioral session, | is listed by: OpenBehavior | NINDS R01NS110823; United States (US) Department of Veterans Affairs Rehabilitation Research and Development Service ; University of Texas at Dallas |
DOI:10.1523/ENEURO.0500-23.2024 | Free, Available for download, Freely available | https://edspace.american.edu/openbehavior/project/aruco-markers/ | SCR_026572 | Augmented Reality University of Cordoba, Aruco | 2026-09-05 06:35:26 | 16 | ||||||
|
STPoseNet Resource Report Resource Website |
STPoseNet (RRID:SCR_026834) | software resource, source code | Source code for pose recognition model for laboratory mice based on yolov8. Real-time spatiotemporal network model for robust mouse pose estimation. | OpenBehavior, spatiotemporal network model, mouse pose estimation, | is listed by: OpenBehavior | National Natural Science Foundation of China | PMID:38711440 | Free, Available for download, Freely available | https://edspace.american.edu/openbehavior/project/stposenet/ | SCR_026834 | 2026-09-05 06:35:32 | 0 | |||||||
|
Active Commutator Resource Report Resource Website |
Active Commutator (RRID:SCR_027098) | instrument resource, software resource, source code | Open source active commutator for Open Ephys / Intan electrophysiology systems. Motorized device used in neuroscience research, particularly in studies involving freely moving animals, to manage wires or fibers connecting headstage or other device to external equipment. Addresses common issue of tether tangling during experiments with freely moving subjects. Relies on Hall-Effect sensor detecting rotation of cable, this information is continuously fed to Adafruit microcontroller that operates servo motor to counter-rotate cable as needed, preventing twisting and ensuring clear, uninterrupted data collection. System can also be paused, restarted, and its neutral position recalibrated with simple button presses, allowing for flexible operation. | OpenBehavior, device, commutator, neuroscience, electrophysiology system, freely moving subjects, flexible operation, | is listed by: OpenBehavior | Free, Available for download, Freely available | SCR_027098 | 2026-09-05 06:35:39 | 0 | ||||||||||
|
Open Source Whisking Video Database Resource Report Resource Website |
Open Source Whisking Video Database (RRID:SCR_021407) | data or information resource, database | Shared database of videos featuring juvenile and adult male rats and adult male mice exploring stationary objects.This dataset includes wide variety of experimental conditions including genetic, pharmacological, and sensory deprivation interventions to explore how active sensing behavior is modulated by different factors. Database of high speed videos of whisking behavior in freely moving rodents.Open source high speed infrared videography database to study principles of active sensing in freely navigating rodents. | High speed videos, whisking behavior, freely moving rodents, infrared videography database, active sensing, OpenBehavior |
is listed by: OpenBehavior is related to: Open Source Whisking Video Database portal |
DOI:10.1093/gigascience/giy134 | Free, Freely available | https://edspace.american.edu/openbehavior/project/open-source-whisking-video-database/ | SCR_021407 | 2026-09-05 06:32:17 | 0 | ||||||||
|
Spike Forest project Resource Report Resource Website |
Spike Forest project (RRID:SCR_021472) | data or information resource, portal, project portal | Project related to neural data analysis. Provides open-source and reproducible software suite that benchmarks performance of automated spike sorting algorithms across extensive, curated database of ground truth electrophysiological recordings, displaying results interactively on continuously updating website. | Validating automated neural spike sorters, electrophysiological recordings, spike sorting codes, spike sorting analysis, OpenBehavior |
is listed by: OpenBehavior is related to: Spike Forest |
DOI:10.7554/elife.55167 | Free, Freely available | SCR_021472 | Spike Forest | 2026-09-05 06:30:58 | 0 | ||||||||
|
Pypreclin project Resource Report Resource Website |
Pypreclin project (RRID:SCR_021473) | data or information resource, portal, project portal | Project related to preprocessing of images. Provieds software Python tool to processes raw macaque fMRI images using algorithms embedded in automatic pipeline. | Raw macaque fMRI images, fMRI images, macaque images, Python, OpenBehavior |
is listed by: OpenBehavior is related to: Pypreclin |
DOI:10.1016/j.neuroimage.2019.116353 | Free, Freely available | SCR_021473 | Pypreclin | 2026-09-05 06:30:58 | 0 | ||||||||
|
MNE Scan project Resource Report Resource Website |
MNE Scan project (RRID:SCR_021470) | data or information resource, portal, project portal | Project related to real time acquisition and processing of electrophysiological data.Provides software tool for acquisition and processing of electrophysiological data. | Electrophysiological data processing, medical regulatory requirements, build standalone applications, MEG data acquisition, MEG data processing, EEG data acquisition, MEG data acquisition, OpenBehavior |
is listed by: OpenBehavior is related to: MNE Scan |
DOI:10.1016/j.jneumeth.2018.03.020 | Free, Freely available | SCR_021470 | MNE Scan | 2026-09-05 06:30:58 | 0 | ||||||||
|
Live Mouse Tracker analysis Resource Report Resource Website 1+ mentions |
Live Mouse Tracker analysis (RRID:SCR_021505) | LMT analysis | software resource, software toolkit | Software package for Live Mouse Tracker analysis. lmt-analysis provides all analysis tools needed to extract information from tracking performed by live mouse tracker. | Live Mouse Tracker, Live Mouse Tracker data analysis, OpenBehavior |
is listed by: OpenBehavior is related to: Live Mouse Tracker project is related to: Live Mouse Tracker Toolkit Analysis |
PMID:31110290 | Free, Available for download, Freely Available | https://edspace.american.edu/openbehavior/project/live-mouse-tracker/ | SCR_021505 | , lmt-analysis, live mouse tracker analysis, LMT analysis | 2026-09-05 06:30:58 | 3 | ||||||
|
3DTracker project Resource Report Resource Website |
3DTracker project (RRID:SCR_021440) | data or information resource, portal, project portal | Project related to markerless computerized behavioral analysis for laboratory animals.Provides open source 3D video based behavioral analysis system for neuroscience. System includes open source software tool for 3D-video based markerless computerized behavioral analysis. | 3D video, computerized behavioral analysis, laboratory animals, reconstruct 3D image, animal image, 3D image, estimate animal 3D pose, behavior measurement, freely moving, head fixed, OpenBehavior |
is listed by: OpenBehavior is related to: 3DTracker |
Free, Freely available | SCR_021440 | 3DTracker | 2026-09-05 06:30:58 | 0 | |||||||||
|
LinCoM project Resource Report Resource Website |
LinCoM project (RRID:SCR_021438) | data or information resource, portal, project portal | Project related to animal behavior in complex mazes.Provides software MATLAB package for linearization of place fields in complex mazes. | Place fields linearization, complex mazes, producing linear place fields, hippocampal cells, complex mazes behavior, OpenBehavior |
is listed by: OpenBehavior is related to: LinCoM |
DOI:10.1101/2020.08.17.253849 | Free, Freely available | SCR_021438 | LinCoM | 2026-09-05 06:30:58 | 0 | ||||||||
|
EthoWatcher project Resource Report Resource Website |
EthoWatcher project (RRID:SCR_021435) | data or information resource, portal, project portal | Project related to video tracking, detailed ethography, and extraction of kinematic variables from digital video files of laboratory animals.Provides computational tool developed at Federal University of Santa Catarina. | Video tracking, kinematic variables extraction. digital video files, laboratory animals, OpenBehavior |
is listed by: OpenBehavior is related to: EthoWatcher has parent organization: Federal University of Santa Catarina; Santa Catarina; Brazil |
DOI:10.1016/j.compbiomed.2011.12.002 | Free, Freely available | SCR_021435 | EthoWatcher | 2026-09-05 06:30:58 | 0 |
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