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SciCrunch Registry is a curated repository of scientific resources, with a focus on biomedical resources, including tools, databases, and core facilities - visit SciCrunch to register your resource.
| Resource Name | Proper Citation | Abbreviations | Resource Type |
Description |
Keywords | Resource Relationships | |||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PTNet Resource Report Resource Website |
PTNet (RRID:SCR_022975) | software resource, source code | Graph based learning model for protein expression estimation by considering miRNA-mRNA interactions. Estimates protein levels by considering miRNA-mRNA interaction network, mRNA expression and miRNA expression. | protein level, protein expression estimation, miRNA-mRNA interactions, mRNA expression, miRNA expression, | NIDDK DK097771; NIGMS R01GM113952; NSF III1755761 |
DOI:10.1093/bib/bbab264 | Free, Available for download, Freely available | SCR_022975 | 2026-09-05 06:34:31 | 0 | |||||||||
|
Rare and Atypical Diabetes Network Resource Report Resource Website 1+ mentions |
Rare and Atypical Diabetes Network (RRID:SCR_024732) | RADIANT | data or information resource, database, disease-related portal, portal, topical portal | Portal dedicated to characterizing, discovering and defining rare and atypical forms of diabetes. Network of universities, hospitals and clinics across the United States dedicated to better understanding atypical diabetes. Team of academic institutions and scientists collaborates with physicians and healthcare groups to identify those with atypical diabetes and learn more about their health. | USA, universities network, hospitals and clinics network, characterizing atypical diabetes, discovering atypical diabetes, defining atypical diabetes, rare and atypical forms of diabetes, atypical diabetes, |
is listed by: NIDDK Information Network (dkNET) is listed by: NIDDK Central Repository |
rare and atypical forms of diabetes, Diabetes | NIDDK | Restricted | SCR_024732 | Rare and Atypical DIAbetes NeTwork | 2026-09-05 06:34:40 | 3 | ||||||
|
STARNET Resource Report Resource Website 1+ mentions |
STARNET (RRID:SCR_025238) | STARNET | data access protocol, software resource, source code, web service | Web interactive browser to visualize data and perform gene set enrichment analysis along with gene and SNP lookup. Web interface used to query STARNET datasets and downstream analysis which includes RNAseq from 7 tissues: blood, free internal mammary artery (MAM), atherosclerotic aortic root (AOR), subcutaneous fat (SF), visceral abdominal fat (VAF), skeletal muscle (SKLM), and liver (LIV). Paired SNP genotyping data is included and utilized for tissue expression quantitative trait loci (eQTL), CAD heritability (H2), co-expression networks and gene regulatory networks. | cross-tissue co-expression analysis, STARNET multitissue gene expression data, cardiovascular disease patients, | American Heart Association ; AstraZeneca ; European Union ; Federal German Ministries ; Heart Lung Foundation ; ModulMax ; New South Wales health ; NHLBI HL138193; NHLBI PO1 HL28481; NHLBI R01 HL144651; NHLBI R01 HL147883; NHLBI R01HL125863; NHLBI R01HL130423; NHLBI R01HL135093; NHLBI R01HL148167; NIDDK R01 DK117850; Swedish Research Council |
PMID:36276926 | Free, Freely available | https://github.com/skoplev/starnet | SCR_025238 | Stockholm-Tartu Atherosclerosis Reverse Networks Engineering Task | 2026-09-05 06:34:53 | 6 | ||||||
|
Penn machine learning benchmark repository Resource Report Resource Website |
Penn machine learning benchmark repository (RRID:SCR_017138) | PMLB | data or information resource, data set | Python wrapper for Penn Machine Learning Benchmark data repository. Large, curated repository of benchmark datasets for evaluating supervised machine learning algorithms. Part of PyPI https://pypi.org/ | benchmark, suite, machine, learning, evaluation, comparison, repository, curated, dataset | NCATS TR001263; NEI EY022300; NHLBI HL134015; NIAID AI116794; NIDDK DK112217; NIEHS ES013508; NLM LM009012; NLM LM010098; NLM LM011360; Warren Center for Network and Data Science |
PMID:29238404 | Free, Restricted | https://github.com/EpistasisLab/penn-ml-benchmarks | SCR_017138 | Penn Machine Learning Benchmark | 2026-09-05 06:34:10 | 0 | ||||||
|
Stanford Diabetes Research Center Diabetes Clinical and Translational Core Resource Report Resource Website 1+ mentions |
Stanford Diabetes Research Center Diabetes Clinical and Translational Core (RRID:SCR_016212) | DCTC, SDRC-DCTC | access service resource, core facility, service resource | With the following services from the Diabetes Clinical and Translational Core (DCTC), members will receive training in biospecimen preservation, study design, data analysis, data management, use of statistical software and clinical trial conduct. | diabetes, clinical, translation, specimen, study, design, data, statistic |
is related to: Stanford Diabetes Research Center Diabetes Genomics Analysis Core is organization facet of: Stanford Diabetes Research Center |
NIDDK P30 DK116074 | SCR_016212 | Diabetes Clinical and Translational Core, Clinical and Translational Core, SDRC Diabetes Clinical and Translational Core | 2026-09-05 06:34:09 | 1 | ||||||||
|
Stanford Diabetes Research Center Diabetes Immune Monitoring Core Resource Report Resource Website |
Stanford Diabetes Research Center Diabetes Immune Monitoring Core (RRID:SCR_016210) | DIMC, SDRC-DIMC | access service resource, core facility, service resource | Core facility that provides immune monitoring assays at the RNA, protein, and cellular level, as well as archiving, reporting, and data mining support for clinical and translational studies related to Diabetes. The DIMC is a specialized subcore of the Human Immune Monitoring Center (HIMC) at Stanford. | diabetes, assay, immune, system, clinical, translational, human, data |
is related to: Stanford Diabetes Research Center Diabetes Genomics Analysis Core is organization facet of: Stanford Diabetes Research Center |
NIDDK P30 DK116074 | SCR_016210 | Diabetes Immune Monitoring Core, SDRC Diabetes Immune Monitoring Core | 2026-09-05 06:34:09 | 0 | ||||||||
|
Stanford Diabetes Research Center Stanford Islet Research Core Resource Report Resource Website |
Stanford Diabetes Research Center Stanford Islet Research Core (RRID:SCR_016211) | SIRC, SDRC-SIRC | access service resource, core facility, service resource | Core facility whose services include: Islet Isolation, Islet transplantation, Islet Culture, Islet Perifusion & Islet Hormone Assays. The SIRC is supported by the Stanford Diabetes Research Center (SDRC). | islet, isolation, transplant, culture, perifusion, assay, hormone |
is related to: Stanford Diabetes Research Center Diabetes Genomics Analysis Core is organization facet of: Stanford Diabetes Research Center |
NIDDK P30 DK116074 | SCR_016211 | SDRC Stanford Islet Research Core, Stanford Islet Research Core | 2026-09-05 06:34:09 | 0 | ||||||||
|
University of California San Francisco Parnassus Flow Cytometry Core Facility Resource Report Resource Website 100+ mentions |
University of California San Francisco Parnassus Flow Cytometry Core Facility (RRID:SCR_018206) | PFCC | access service resource, core facility, service resource | Core assists investigators whose research requires molecular marker characterization of cells in suspension as well as isolation of cells based on those markers. Advanced cell sorting and cytometric analyses by Flow or Mass Cytometry are provided. | Molecular marker, cell characterization, cell in suspension, cell isolation, cell sorting, flow cytometry, mass cytometry, cytometric analysis, core facility, ABRF |
is listed by: ABRF CoreMarketplace is related to: USEDit |
NIDDK P30DK063720 | Restricted | ABRF_1007, SCR_015105 | https://coremarketplace.org?FacilityID=1007 | SCR_018206 | University of California San Francisco Diabetes Research Center Cytometry and Cell Sorting Core, , University of California San Francisco Diabetes Research Center Parnassus Flow Cytometry CoLab, UCSF Parnassus Flow CoLab | 2026-09-05 06:34:16 | 174 | |||||
|
Einstein-Mount Sinai Diabetes Research Center Translational Research Core Facility Resource Report Resource Website |
Einstein-Mount Sinai Diabetes Research Center Translational Research Core Facility (RRID:SCR_015068) | access service resource, core facility, service resource | Core services include consultation, technical support and training and mentoring in clinical and translational research methods that are specifically applicable to diabetes, its complications and related metabolic disorders. Personel provides expertise in first-in-human and mechanistic studies in integrative physiology, in clinical trials of diabetes and obesity, and in application of new technologies. | translational research, data interpretation, diabetes research |
is listed by: NIDDK Information Network (dkNET) is listed by: ABRF CoreMarketplace has parent organization: Einstein-Mount Sinai Diabetes Research Center is organization facet of: Einstein-Mount Sinai Diabetes Research Center |
Diabetes | New York Obesity Research Center ; Center for the Study of Diabetic Complications ; Montefiore Clinical Diabetes Center ; NIDDK P30DK020541 |
Open | ABRF_2861 | https://coremarketplace.org/?FacilityID=2861&citation=1 | http://www.einstein.yu.edu/centers/diabetes-research/research-areas/biomedical-cores/translational-research-core/ | SCR_015068 | Einstein-Mount Sinai Diabetes Research Center Translational Research Core | 2026-09-05 06:34:01 | 0 | ||||
|
University of California San Francisco Diabetes Research Center Mouse Metabolism Core Resource Report Resource Website |
University of California San Francisco Diabetes Research Center Mouse Metabolism Core (RRID:SCR_015101) | access service resource, core facility, resource, service resource | THIS RESOURCE IS NO LONGER IN SERVICE. Documented on October 10,2024. Core which provides technical support for UCSF investigators to conduct metabolic studies using a 12-chambered Comprehensive Lab Animal Monitoring System (CLAMS), an EchoMRI, and Dual energy X-ray absorptiometry, which together allow measurement of food intake, water intake, motor activities, core temperature, and body composition in live mice. It also helps to identify emerging technologies that will enhance multiple research programs and coordinates the acquisition and maintenance of those facilities. | mouse metabolism, obesity, metabolic diseases |
is listed by: NIDDK Information Network (dkNET) has parent organization: University of California at San Francisco; California; USA has parent organization: University of California San Francisco Diabetes Research Center is organization facet of: University of California San Francisco Diabetes Research Center |
Diabetes | NIDDK P30DK063720 | THIS RESOURCE IS NO LONGER IN SERVICE | http://drc.ucsf.edu/mouse-metabolism-core | SCR_015101 | 2026-09-05 06:34:01 | 0 | |||||||
|
Boston Area Diabetes Endocrinology Research Center Cell Biology and Morphology Core Facility Resource Report Resource Website |
Boston Area Diabetes Endocrinology Research Center Cell Biology and Morphology Core Facility (RRID:SCR_015069) | access service resource, core facility, service resource | Services provided include tissue preparation, embedding and sectioning for electron microscopy, use of electron microscope and photography of thin sections, immunogold staining for electron microscopy, preparation and incubation of samples (cells and tissues) for immunofluorescence microscopy, confocal microscopy and digital imaging. | microscopy, immunofluorescence, immunogold, morphology, confocal microscopy, electron microscopy, digital imaging, |
is listed by: NIDDK Information Network (dkNET) is listed by: ABRF CoreMarketplace is organization facet of: Boston Area Diabetes Endocrinology Research Center |
Diabetes | NIDDK P30DK057521 | Restricted | ABRF_2860 | https://coremarketplace.org/?FacilityID=2860&citation=1 | http://www.baderc.org/cores/CBMCore.html | SCR_015069 | Boston Area Diabetes Endocrinology Research Center Cell Biology and Morphology | 2026-09-05 06:34:01 | 0 | ||||
|
University of California San Francisco Diabetes Research Center Islet Production Core Facility Resource Report Resource Website |
University of California San Francisco Diabetes Research Center Islet Production Core Facility (RRID:SCR_015106) | access service resource, core facility, service resource | Core that enables clinical and basic research that analyzes the function of isolated pancreatic islets. It coordinates and delivers purified human islets to investigators when research need matches the availability of a human pancreas. | islet isolation, pancreatic islets |
has parent organization: University of California at San Francisco; California; USA has parent organization: University of California San Francisco Diabetes Research Center is organization facet of: University of California San Francisco Diabetes Research Center |
Diabetes | NIDDK P30DK063720 | Restricted | http://drc.ucsf.edu/islet-production-core | SCR_015106 | 2026-09-05 06:34:01 | 0 | |||||||
|
University of California San Francisco Diabetes Research Center Microscopy Core Facility Resource Report Resource Website |
University of California San Francisco Diabetes Research Center Microscopy Core Facility (RRID:SCR_015103) | access service resource, core facility, service resource | Core that consolidates, enhances and disseminates Diabetes Center resources and expertise in tissue and cell imaging technologies. Confocal fluorescence, widefield fluorescence, high throughput fluorescence and brightfield microscopes are available directly within the DRC Microscopy Core. Image quantification and analysis is performed at dedicated workstations. | tissue imaging, cell imaging, fluorescence, brightfield microscopes, microscopy |
is listed by: NIDDK Information Network (dkNET) has parent organization: University of California at San Francisco; California; USA has parent organization: University of California San Francisco Diabetes Research Center is organization facet of: University of California San Francisco Diabetes Research Center |
Diabetes | NIDDK P30DK063720 | Restricted | http://drc.ucsf.edu/microscopy-core | SCR_015103 | , DRC Microscopy Core | 2026-09-05 06:34:01 | 0 | ||||||
|
University of California San Francisco Diabetes Research Center Lentiviral RNAi Core Facility Resource Report Resource Website |
University of California San Francisco Diabetes Research Center Lentiviral RNAi Core Facility (RRID:SCR_015104) | access service resource, core facility, service resource | THIS RESOURCE IS NO LONGER IN SERVICE. Documented on November 5,2024. Core that provides reagents, equipment, training, supervision, and monitoring of investigators wishing to ensure the proper compliance with biosafety containment required for lentiviral-based research, lentiviral preparation services for investigators, and education on RNAi experimentation, through the lentiviral core website, and through protocols available at the facility. | lentivirus, RNA interference, short hairpin RNAs, shRNA |
is listed by: NIDDK Information Network (dkNET) has parent organization: University of California at San Francisco; California; USA has parent organization: University of California San Francisco Diabetes Research Center is organization facet of: University of California San Francisco Diabetes Research Center |
Diabetes | NIDDK P30DK063720 | THIS RESOURCE IS NO LONGER IN SERVICE | SCR_015104 | 2026-09-05 06:34:01 | 0 | ||||||||
|
Boston Area Diabetes Endocrinology Research Center Molecular Biology Resource Report Resource Website |
Boston Area Diabetes Endocrinology Research Center Molecular Biology (RRID:SCR_015079) | access service resource, core facility, service resource | THIS RESOURCE IS NO LONGER IN SERVICE. Documented on July 24,2024. Core that provides services for DNA sequencing and oligonucleotide synthesis, as well as support for projects that require research laboratory automation, such as siRNA screens and transcript abundance profiling. It also offers experimental design and advice for automation and high throughput screening of siRNA collections based on the Ambion siRNA collection. | DNA sequencing, siRNA collection, research laboratory automation |
is listed by: NIDDK Information Network (dkNET) has parent organization: Boston Area Diabetes Endocrinology Research Center is organization facet of: Boston Area Diabetes Endocrinology Research Center |
Diabetes | NIDDK P30DK057521 | THIS RESOURCE IS NO LONGER IN SERVICE | SCR_015079 | 2026-09-05 06:34:01 | 0 | ||||||||
|
University of Alabama at Birmingham Diabetes Research Center Animal Physiology Core Facility Resource Report Resource Website |
University of Alabama at Birmingham Diabetes Research Center Animal Physiology Core Facility (RRID:SCR_015110) | access service resource, core facility, service resource | Core that provides diabetes researches with diabetes related phenotyping in small animal models. Their services offered include the assessment of body composition, energy balance, glucose homeostasis, cardiovascular assessment, imaging, and transgenic animals models. | ABRF, animal physiology, phenotyping, transgenetics, diabetes, phenotyping, small animal models, assessment of body composition, energy balance, glucose homeostasis, transgenic animals models, |
is listed by: NIDDK Information Network (dkNET) is listed by: ABRF CoreMarketplace has parent organization: University of Alabama at Birmingham; Alabama; USA has parent organization: University of Alabama at Birmingham Diabetes Research Center is organization facet of: University of Alabama at Birmingham Diabetes Research Center |
Diabetes | NIDDK DK079626 | Open | ABRF_2971 | https://coremarketplace.org/?FacilityID=2971&citation=1 | SCR_015110 | Animal Physiology Core | 2026-09-05 06:34:01 | 0 | |||||
|
Columbia Diabetes Research Center Flow Cytometry and Cell Sorting Core Facility Resource Report Resource Website |
Columbia Diabetes Research Center Flow Cytometry and Cell Sorting Core Facility (RRID:SCR_015078) | access service resource, core facility, service resource | Core which assists investigators to quantify and phenotypically characterize cell populations that contribute to the metabolic, immunologic and developmental programs of diabetes and its complications; and to purify populations of cells of relevance to diabetes and its complications. | cytometry, flow cytometry, cell sorting, diabetes |
is listed by: NIDDK Information Network (dkNET) is listed by: ABRF CoreMarketplace has parent organization: Columbia University; New York; USA is organization facet of: Columbia Diabetes Research Center |
Diabetes | NIDDK P30DK063608 | ABRF_2857 | https://coremarketplace.org/?FacilityID=2857&citation=1 | https://www.derc.cumc.columbia.edu/core-facilities-and-services/flow-cyometry-and-cell-sorting-core | SCR_015078 | Columbia Diabetes Research Center Flow Cytometry and Cell Sorting Core | 2026-09-05 06:34:01 | 0 | |||||
|
Michigan Diabetes Research Center Administrative Core Facility Resource Report Resource Website |
Michigan Diabetes Research Center Administrative Core Facility (RRID:SCR_015115) | MDRC | access service resource, core facility, service resource | Administration Core of the Michigan Diabetes Research Center (MDRC) provides leadership, infrastructure, and resources to support and enhance diabetes research, including the translation of scientific discoveries from bench to bedside. Establishes, promotes, and enhances multidisciplinary and collaborative basic biomedical and clinical research among member investigators studying diabetes, its complications, and related endocrine and metabolic disorders. | basic and clinical research related to diabetes, provides core services, fosters interdisciplinary collaborations, |
has parent organization: University of Michigan; Ann Arbor; USA is organization facet of: Michigan Diabetes Research Center |
Diabetes | NIDDK P30DK020572 | http://diabetesresearch.med.umich.edu/Core_MDRC_Admin.php | SCR_015115 | , Michigan Diabetes Research Center Administrative Core, MDRC Administrative Core | 2026-09-05 06:34:01 | 0 | ||||||
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Boston Area Diabetes Endocrinology Research Center Pancreatic Islet Resource Report Resource Website |
Boston Area Diabetes Endocrinology Research Center Pancreatic Islet (RRID:SCR_015073) | access service resource, core facility, service resource | THIS RESOURCE IS NO LONGER IN SERVICE. Documented on July 23,2024.Core which provides islets to the local diabetes research community in the Boston area. They collaborate with researchers nationally to provide nonhuman primate (NHP) islets for research. | islet, islet isolation, pancreatic islet |
is listed by: NIDDK Information Network (dkNET) is organization facet of: Boston Area Diabetes Endocrinology Research Center |
Diabetes | NIDDK P30DK057521 | THIS RESOURCE IS NO LONGER IN SERVICE | SCR_015073 | 2026-09-05 06:34:01 | 0 | ||||||||
|
Washington University School of Medicine Diabetes Research Center Immunology of Type 1 Diabetes Core Resource Report Resource Website |
Washington University School of Medicine Diabetes Research Center Immunology of Type 1 Diabetes Core (RRID:SCR_015143) | access service resource, core facility, service resource | THIS RESOURCE IS NO LONGER IN SERVICE. Documented on November 7,2024. Core facility that provides logistic support to investigators examining autoimmune or type 1 diabetes mellitus (T1DM) or other endocrine autoimmunities. Its main purpose is to foster fundamental studies on T1DM through support for acquisition and use of diabetogenic strains of mice, islet isolation, and distribution of cells and antibodies relevant for immunological studies of T1DM. | diabetes, logistic, autoimmune, type 1 diabetes mellitus, endocrine, diabetogenic mice, islet isolation, immunological study |
is listed by: NIDDK Information Network (dkNET) has parent organization: Washington University School of Medicine in St. Louis; Missouri; USA has parent organization: Washington University School of Medicine Diabetes Research Center is organization facet of: Washington University School of Medicine Diabetes Research Center |
Type 1 diabetes, Diabetes | NIDDK P30DK020579 | THIS RESOURCE IS NO LONGER IN SERVICE | SCR_015143 | 2026-09-05 06:34:02 | 0 |
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