Tools   Select Another Resource Report Type

https://github.com/alexcwsmith/PiRATeMC

Software data management pipeline for camera synchronization and combined data directories.

Proper citation: Pi-based Remote Acquisition Technology for Motion Capture (RRID:SCR_022327) Copy   

•   Source: SciCrunch Registry
  

https://github.com/mtu-most/linear-actuator

Code and model files for open source linear actuator. Part of Pearce Lab Syringe Pump system.

Proper citation: linear actuator (RRID:SCR_021613) Copy   

•   Source: SciCrunch Registry
  

https://github.com/KravitzLab/ROBucket

Software tool as ROBucket source code.

Proper citation: Rodent Operant Bucket (RRID:SCR_021610) Copy   

•   Source: SciCrunch Registry
  

https://github.com/jf-lab/chendoscope

Software tool as part of CHEndoscope. Acquisition software that interfaces with CHEndoscope Ximea USB camera. This code is compatible with Linux and Windows systems.

Proper citation: chendoscope (RRID:SCR_021616) Copy   

•   Source: SciCrunch Registry
  

https://github.com/jamieboyd/AutoHeadFix

Software Python code for automated control of behavioural apparatus and imaging for mice in home cage environment.Part of Homecage Task Training and Mesoscale Imaging system.

Proper citation: AutoHeadFix (RRID:SCR_021617) Copy   

•   Source: SciCrunch Registry
  

https://github.com/bsbrl/craniobot

Software tool as part of Craniobot system.Generates, sends, and receives commands to communicate with the Craniobot.

Proper citation: craniobot (RRID:SCR_021609) Copy   

•   Source: SciCrunch Registry
  

https://murphylab.med.ubc.ca/automated-homecages/

Software tool as part of Automated Home Cage Functional Imaging system.

Proper citation: Automated Home-Cage Functional Imaging (RRID:SCR_021607) Copy   

•   Source: SciCrunch Registry
  

https://github.com/dublon/scintillate

Open source graphical viewer for time series calcium imaging evaluation and pre-processing.

Proper citation: Scintillate (RRID:SCR_021531) Copy   

•   Source: SciCrunch Registry
  

https://github.com/ribeiro-lab/flyPAD-fpga

FPGA code for running main board of flyPAD. Code written in VHDL using Quartus 2 web edition software.

Proper citation: flyPAD (RRID:SCR_021522) Copy   

•   Source: SciCrunch Registry
  

https://github.com/KaetzelLab

Operant Box code

Proper citation: pyOS-5 (RRID:SCR_022336) Copy   

•   Source: SciCrunch Registry
  

https://github.com/tne-lab/py-behav-box-v2

Open source software interface and framework for controlling behavioral experiments in neuroscience and psychology. Python-based framework for designing and controlling behavioral experiments in animals. Used to develop, perform, and control behavioral tasks.

Proper citation: PyBehave (RRID:SCR_025406) Copy   

•   Source: SciCrunch Registry
  

https://github.com/ThomasAkam/active_commutator

Open source active commutator for Open Ephys / Intan electrophysiology systems. Motorized device used in neuroscience research, particularly in studies involving freely moving animals, to manage wires or fibers connecting headstage or other device to external equipment. Addresses common issue of tether tangling during experiments with freely moving subjects. Relies on Hall-Effect sensor detecting rotation of cable, this information is continuously fed to Adafruit microcontroller that operates servo motor to counter-rotate cable as needed, preventing twisting and ensuring clear, uninterrupted data collection. System can also be paused, restarted, and its neutral position recalibrated with simple button presses, allowing for flexible operation.

Proper citation: Active Commutator (RRID:SCR_027098) Copy   

•   Source: SciCrunch Registry
  

https://edspace.american.edu/openbehavior/project/dual-port-lick-detector/

Project related to measuring licking behavior in mice.System includes device used for both real time measurement and manipulation of licking behavior in head fixed mice. System provides distribution package for Dual Port Lick Detector.Package includes files relevant to building lick detector.

Proper citation: Dual port Lick Detector project (RRID:SCR_021454) Copy   

•   Source: SciCrunch Registry
  

https://edspace.american.edu/openbehavior/project/cerebro/

Project related to wireless controlled optogenetic stimulation. Provides system for wireless optogenetic stimulation developed in Karpova Lab with ability to be customized.Features Cerebro,rechargeable, battery powered wireless receiver;head implant containing optical fibers and two independent laser diodes; base station for transmitting radio signals to Cerebro, controlled by Windows computer via USB or by TTL; charging dock; and Xavier, user friendly GUI for sending and logging base station commands.

Proper citation: Cerebro Wireless Optogenetic System project (RRID:SCR_021474) Copy   

•   Source: SciCrunch Registry
  

https://edspace.american.edu/openbehavior/project/4-port-nose-poke/

Portal provides open source nose poke system utilizing Arduino microcontroller, several low cost electronic components, and PVC behavioral arena. System developed by University of Basel scientists for use in behavior experiments.

Proper citation: 4 Port Nose Poke (RRID:SCR_021592) Copy   

•   Source: SciCrunch Registry
  

https://edspace.american.edu/openbehavior/project/open-source-platform-sensory-tasks/

Project related to report animal decision in response to stimulus.Includes software tool as Arduino and Python based platform for Go or No Go sensory task to report animal decision in response to stimulus provided by University of Melbourne, Melbourne, VIC, Australia scientists.

Proper citation: Open Source platform for Sensory Tasks project (RRID:SCR_021468) Copy   

•   Source: SciCrunch Registry
  

https://edspace.american.edu/openbehavior/project/deepethogram/

Software tool to extract relevant features from images and use time series of these features to classify whether given behavior is present in each frame of video recording.machine learning pipeline for supervised behavior classification from raw pixels. Performs action recognition ,automated behavior classification, over frames. Used for automated behavior classification to detect and track behavior over time.

Proper citation: DeepEthogram (RRID:SCR_022355) Copy   

•   Source: SciCrunch Registry
  

https://edspace.american.edu/openbehavior/project/mri-compatible-microdrive/

MRI compatible microdrive that can precisely position electrodes without causing significant imaging artifacts.

Proper citation: MRI Compatible Microdrive (RRID:SCR_022352) Copy   

•   Source: SciCrunch Registry
  

https://github.com/SunGL001/DeepBhvTracking

Software tool as novel tracking algorithm that combines deep learning and background subtraction.

Proper citation: DeepBhvTracking (RRID:SCR_022351) Copy   

•   Source: SciCrunch Registry
  

https://edspace.american.edu/openbehavior/project/neonatal-stereotax/

3D printed device for stereotaxic viral delivery into brains of neonatal mice.Used for stable and precise stereotaxic surgery in neonatal mice.

Proper citation: Neonatal Stereotaxic Mouse Adaptor (RRID:SCR_022349) Copy   

•   Source: SciCrunch Registry