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Species: Synthetic
Genetic Insert: DsRE2, EBFP2-P2A-BlastR
Vector Backbone Description: Vector Backbone:pPD630 Integration Vector; Vector Types:Mammalian Expression, Synthetic Biology; Bacterial Resistance:Kanamycin
Defining Citation: PMID:40315428
Comments: Leonard Lab plasmid reference number: L3119
Proper citation: RRID:Addgene_253878 Copy
Species: Synthetic
Genetic Insert: DsRE2, HIF1_*, EBFP2-P2A-BlastR
Vector Backbone Description: Vector Backbone:pPD630 Integration Vector; Vector Types:Mammalian Expression, Synthetic Biology; Bacterial Resistance:Kanamycin
Defining Citation: PMID:40315428
Comments: Leonard Lab plasmid reference number: L3121
Proper citation: RRID:Addgene_253879 Copy
Vector Backbone Description: Vector Backbone:pKD3; Vector Types:Bacterial Expression, Arabinose biosensor; Bacterial Resistance:Spectinomycin
Proper citation: RRID:Addgene_249659 Copy
Species: Mus musculus
Genetic Insert: mouse a-synuclein sgRNA
Vector Backbone Description: Vector Backbone:pX601-AAV-CMV::NLS-SaCas9-NLS-3xHA-bGHpA;U6::BsaI-sgRNA; Vector Types:AAV; Bacterial Resistance:Ampicillin
Defining Citation: PMID:40700012
Proper citation: RRID:Addgene_239420 Copy
Species: E. coli
Genetic Insert: L3S3P11
Vector Backbone Description: Vector Backbone:pYTK001; Vector Types:Bacterial Expression, Synthetic Biology; Bacterial Resistance:Chloramphenicol
Defining Citation: PMID:41581077
Comments: Type 4 pasts are terminators in the CTK system
Please note: This plasmid contains a C nucleotide insertion in L3S3P11. This insertion is not known to impact plasmid function.
Proper citation: RRID:Addgene_248472 Copy
Genetic Insert: VHH-cAb-Lys3
Vector Backbone Description: Vector Backbone:pET29b; Vector Types:Bacterial Expression; Bacterial Resistance:Kanamycin
Defining Citation: PMID:42053294
Proper citation: RRID:Addgene_248353 Copy
Species: Homo sapiens
Genetic Insert: HIF1a
Vector Backbone Description: Vector Backbone:CMV5; Vector Types:Mammalian Expression; Bacterial Resistance:Ampicillin
Defining Citation: PMID:26215701
Comments: Please note that Addgene's sequencing results differ from the full sequence information provided by the depositing laboratory, finding 8 amino acids (GHMGSATM) added upstream of hHIF1a. The depositor confirms that this change is not known to affect plasmid function.
Proper citation: RRID:Addgene_246218 Copy
Species: Synthetic
Genetic Insert: EF1α-SaCas9; NES; NpuN;
Vector Backbone Description: Vector Backbone:pAAV; Vector Types:Mammalian Expression, AAV, CRISPR; Bacterial Resistance:Ampicillin
Defining Citation: PMID:42202045
Proper citation: RRID:Addgene_250957 Copy
Vector Backbone Description: Vector Backbone:ColE1; Vector Types:Bacterial Expression, Synthetic Biology; Bacterial Resistance:Ampicillin
Defining Citation: PMID:41581077
Comments: Type 678 parts are backbones in the CTK system
Please note: This plasmid contains a G265C mutation in LacI. This mutation is not known to impact plasmid function.
Proper citation: RRID:Addgene_248480 Copy
Species: Mus musculus
Genetic Insert: Anti-HA scFv Frankenbody
Vector Backbone Description: Backbone Marker:John Dueber, Addgene plasmid #65108; Vector Backbone:pYTK001; Vector Types:Bacterial Expression; Bacterial Resistance:Chloramphenicol
Defining Citation: PMID:42025218
Comments: YSD 2.0 Toolkit Plasmid. Please visit https://doi.org/10.1101/2025.08.19.671047 for bioRxiv preprint.
Proper citation: RRID:Addgene_252972 Copy
Vector Backbone Description: Vector Backbone:ColE1; Vector Types:Bacterial Expression, Synthetic Biology; Bacterial Resistance:Ampicillin
Defining Citation: PMID:41581077
Comments: Type 678 parts are backbones in the CTK system
Please note: This plasmid contains L171F and V200F mutations in araC. These mutations are not known to impact plasmid function.
Proper citation: RRID:Addgene_248488 Copy
Species: Homo sapiens
Genetic Insert: FIH
Vector Backbone Description: Vector Backbone:CMV5; Vector Types:Mammalian Expression; Bacterial Resistance:Ampicillin
Defining Citation: PMID:26215701
Comments: Please note that Addgene's sequencing results differ from the full sequence information provided by the depositing laboratory, finding 3 amino acids (GMA) inserted upstream of hHIF1a. The depositor confirms that this change is not known to affect plasmid function.
Proper citation: RRID:Addgene_246220 Copy
Genetic Insert: sfGFP
Vector Backbone Description: Vector Backbone:pPink; Vector Types:Donor plasmid; Bacterial Resistance:Ampicillin
Comments: There is a minor discrepancy between the Addgene NGS sequence and the depositor sequence: 48bp indel in polyA region. Depositor confirms this is not of concern for plasmid function.
Proper citation: RRID:Addgene_253831 Copy
Species: Homo sapiens
Genetic Insert: HDAC4
Vector Backbone Description: Vector Backbone:pBOBI; Vector Types:Mammalian Expression; Bacterial Resistance:Ampicillin
Defining Citation: PMID:39695235
Proper citation: RRID:Addgene_246153 Copy
Genetic Insert: VHH-H04
Vector Backbone Description: Vector Backbone:pET29b; Vector Types:Bacterial Expression; Bacterial Resistance:Kanamycin
Defining Citation: PMID:42053294
Proper citation: RRID:Addgene_248574 Copy
Species: Synthetic
Genetic Insert: GFP
Vector Backbone Description: Vector Backbone:pAC17v5a; Vector Types:Bacterial Expression, Arabinose biosensor; Bacterial Resistance:Spectinomycin
Proper citation: RRID:Addgene_249664 Copy
Species: Homo sapiens
Genetic Insert: HDAC3
Vector Backbone Description: Vector Backbone:pBOBI; Vector Types:Mammalian Expression; Bacterial Resistance:Ampicillin
Defining Citation: PMID:39695235
Proper citation: RRID:Addgene_246152 Copy
Genetic Insert: araC
Vector Backbone Description: Vector Backbone:pAC17v5b; Vector Types:Bacterial Expression, Arabinose biosensor; Bacterial Resistance:Ampicillin
Proper citation: RRID:Addgene_249663 Copy
Genetic Insert: Strep-HEWL-VHH-H04
Vector Backbone Description: Vector Backbone:pET29b; Vector Types:Bacterial Expression; Bacterial Resistance:Kanamycin
Defining Citation: PMID:42053294
Proper citation: RRID:Addgene_248576 Copy
Vector Backbone Description: Vector Backbone:pKD3; Vector Types:Bacterial Expression, Arabinose biosensor; Bacterial Resistance:Kanamycin
Proper citation: RRID:Addgene_249660 Copy
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