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Vector Backbone Description: Backbone Marker:CAMBIA; Vector Backbone:Xpre2-K (pCAMBIA); Vector Types:plant expression; Bacterial Resistance:Chloramphenicol and Kanamycin
Defining Citation: PMID:24551083
Comments: binary expression vector. LIII/LV backbone.
Proper citation: RRID:Addgene_54391 Copy
Vector Backbone Description: Backbone Marker:N/A; Backbone Size:4559; Vector Backbone:pSAM_Ec; Vector Types:Bacterial Expression; Bacterial Resistance:Chloramphenicol and Kanamycin
Defining Citation: PMID:26060277
Comments: Mariner himar1C9 transposase driven by lac promoter on an R6K gamma suicide plasmid. The transposon allows identification of fitness factors by Illumina sequencing. This transposon will randomly insert a kanamycin resistance cassette into genomic TA sites. Chloramphenicol resistance is contained on the plasmid backbone.
For further background, see:
Goodman, Andrew L., Meng Wu, and Jeffrey I. Gordon. “Identifying Microbial Fitness Determinants by Insertion Sequencing (INSeq) Using Genome-Wide Transposon Mutant Libraries.” Nature Protocols 6.12 (2011): 1969–1980. PMC. Web. 11 Apr. 2017.
Wiles, Travis J. et al. “Combining Quantitative Genetic Footprinting and Trait Enrichment Analysis to Identify Fitness Determinants of a Bacterial Pathogen.” Ed. Danielle A. Garsin. PLoS Genetics 9.8 (2013): e1003716. PMC. Web. 11 Apr. 2017.
Proper citation: RRID:Addgene_91570 Copy
Species: Synthetic
Genetic Insert: Splitposon w/ KanR, LacI & PTac
Vector Backbone Description: Vector Backbone:pSB1C3; Vector Types:Bacterial Expression; Bacterial Resistance:Chloramphenicol and Kanamycin
Defining Citation: PMID:25080493
Proper citation: RRID:Addgene_59947 Copy
Species: Pseudomonas putida strain CBB5
Genetic Insert: ndmA
Vector Backbone Description: Backbone Marker:igem parts registry; Backbone Size:2070; Vector Backbone:pSB1C3; Vector Types:Bacterial Expression, Synthetic Biology; Bacterial Resistance:Chloramphenicol and Kanamycin
Defining Citation: PMID:23654268
Comments: The sequence of this plasmid is updated from the GenBank entry for pDCAF3 (KC619530.1) to include an IS5 insertion that occurred in the promoter region of the caffeine demethylation genes during passaging of the strain and a base change in the sequence of the gst9 gene. This plasmid still functions as described in the publication for pDCAF3.
Vector constitutively expresses N-demethylase genes under the control of the BBa_J23100 promoter (http://parts.igem.org/Part:BBa_J23100).
N-demethylases are only functional when grown at 30°C and require iron supplementation in minimal media. See:
Summers, R. M., Louie, T. M., Yu, C.-L., Gakhar, L., Louie, K.C., and Subramanian, M. (2012) Novel, highly specific Ndemethylases enable bacteria to live on caffeine and related purine alkaloids. J. Bacteriol. 194, 2041−2049.
For the quantification of caffeine (or other methylxanthine) content it is recommended to grow cells in M9 minimal medium supplemented with 2 g/L glucose and 2 g/L casein (M9GC).
Please note that this plasmid may require a unique bacterial strain, so make sure to confirm that you can also obtain the appropriate growth strain. Please contact us at [email protected] or contact our distributors if you have any questions.
Proper citation: RRID:Addgene_65220 Copy
Vector Backbone Description: Vector Backbone:none; Vector Types:Synthetic Biology; Bacterial Resistance:Chloramphenicol and Kanamycin
Defining Citation: PMID:27084942
Comments: Please note that parental strain (MC4100) is streptomycin-resistant.
Proper citation: RRID:Addgene_69771 Copy
Species: Arabidopsis thaliana
Genetic Insert: AtMIR390a-B/c
Vector Backbone Description: Backbone Size:2580; Vector Backbone:pENTR; Vector Types:Gateway Cloning; Bacterial Resistance:Chloramphenicol and Kanamycin
Defining Citation: PMID:24647477
Proper citation: RRID:Addgene_51778 Copy
Species: Arabidopsis thaliana
Genetic Insert: AtMIR390a-B/c
Vector Backbone Description: Backbone Size:8754; Vector Backbone:pMDC123; Vector Types:Plant Expression; Bacterial Resistance:Chloramphenicol and Kanamycin
Defining Citation: PMID:24647477
Proper citation: RRID:Addgene_51775 Copy
Species: Arabidopsis thaliana
Genetic Insert: AtTAS1c-B/c
Vector Backbone Description: Backbone Size:2580; Vector Backbone:pENTR; Vector Types:GATEWAY-compatible entry clone; Bacterial Resistance:Chloramphenicol and Kanamycin
Defining Citation: PMID:24647477
Proper citation: RRID:Addgene_51774 Copy
Vector Backbone Description: Vector Backbone:pVP077; Vector Types:Synthetic Biology, GreenGate compatible cloning vector; Bacterial Resistance:Chloramphenicol and Kanamycin
Defining Citation: PMID:39292669
Proper citation: RRID:Addgene_222070 Copy
Vector Backbone Description: Vector Backbone:pVP077; Vector Types:Synthetic Biology, GreenGate compatible cloning vector; Bacterial Resistance:Chloramphenicol and Kanamycin
Defining Citation: PMID:39292669
Proper citation: RRID:Addgene_222072 Copy
Vector Backbone Description: Vector Backbone:pVP077; Vector Types:Synthetic Biology, GreenGate compatible cloning vector; Bacterial Resistance:Chloramphenicol and Kanamycin
Defining Citation: PMID:39292669
Proper citation: RRID:Addgene_222071 Copy
Vector Backbone Description: Vector Backbone:pVP077; Vector Types:Synthetic Biology, GreenGate compatible cloning vector; Bacterial Resistance:Chloramphenicol and Kanamycin
Defining Citation: PMID:39292669
Proper citation: RRID:Addgene_222073 Copy
Species: Synthetic
Genetic Insert: BEVA2.0 Position 2 Km/Nm antibiotic resistance via nptII, CmR/KmR/NmR.
Vector Backbone Description: Backbone Marker:New England Biolabs; Vector Backbone:pGGAselect; Vector Types:Bacterial Expression; Bacterial Resistance:Chloramphenicol and Kanamycin
Defining Citation: PMID:39919271
Proper citation: RRID:Addgene_231307 Copy
Species: Synthetic
Genetic Insert: Kanamycin resistance cassette
Vector Backbone Description: Backbone Size:2824; Vector Backbone:pBTK1001; Vector Types:Bacterial Expression; Bacterial Resistance:Chloramphenicol and Kanamycin
Defining Citation: PMID:40827214
Proper citation: RRID:Addgene_236186 Copy
Species: Arabidopsis thaliana
Genetic Insert: Basal stem of Arabidopsis MIR390a precursor with A18G mutation and a chloramphenicol-ccdB cassette flanked by 2 BsaI sites
Vector Backbone Description: Backbone Size:2580; Vector Backbone:pENTR; Vector Types:Gateway Cloning; Bacterial Resistance:Chloramphenicol and Kanamycin
Defining Citation: PMID:41505763
Proper citation: RRID:Addgene_246715 Copy
Vector Backbone Description: Backbone Marker:Twist Biosciences; Vector Backbone:pTwist Kan High Copy; Vector Types:Synthetic Biology; Bacterial Resistance:Chloramphenicol and Kanamycin
Defining Citation: PMID:38986614
Comments: Please visit https://doi.org/10.1101/2023.11.03.565112 for bioRxiv preprint.
Proper citation: RRID:Addgene_218891 Copy
Vector Backbone Description: Backbone Marker:Twist Biosciences; Vector Backbone:pTwist Kan High Copy; Vector Types:Synthetic Biology; Bacterial Resistance:Chloramphenicol and Kanamycin
Defining Citation: PMID:38986614
Comments: Please visit https://doi.org/10.1101/2023.11.03.565112 for bioRxiv preprint.
Proper citation: RRID:Addgene_218892 Copy
Species: Syrian Golden Hamster
Genetic Insert: full length hamster prion protein (aa 23-231)
Vector Backbone Description: Vector Backbone:pET-41a(+); Vector Types:Bacterial Expression; Bacterial Resistance:Chloramphenicol and Kanamycin
Defining Citation: PMID:21152012
Comments: DNA Sequences coding for hamster (residues 23-231; accession K02234) rPrPc residues were amplified and ligated into the pET41 vector (EMD Biosciences) and sequences were verified. Plasmids were transformed into E. coli Rosetta cells (EMD Biosciences).
Proper citation: RRID:Addgene_255046 Copy
Species: Other
Genetic Insert: B/c
Vector Backbone Description: Vector Backbone:pMDC32; Vector Types:Plant Expression; Bacterial Resistance:Chloramphenicol and Kanamycin
Defining Citation: PMID:40105245
Comments: Please visit https://doi.org/10.1101/2024.12.18.629176 for bioRxiv preprint.
Proper citation: RRID:Addgene_227965 Copy
Species: Other
Genetic Insert: B/c
Vector Backbone Description: Backbone Size:2581; Vector Backbone:pENTR; Vector Types:; Bacterial Resistance:Chloramphenicol and Kanamycin
Defining Citation: PMID:40105245
Comments: Please visit https://doi.org/10.1101/2024.12.18.629176 for bioRxiv preprint.
Proper citation: RRID:Addgene_227962 Copy
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