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Species: Homo sapiens
Genetic Insert: gRNA3-1
Vector Backbone Description: Vector Backbone:pLentiGuide-Puro-FE; Vector Types:Mammalian Expression, CRISPR; Bacterial Resistance:Ampicillin
Defining Citation: PMID:37075754
Proper citation: RRID:Addgene_248526 Copy
Species: Homo sapiens
Genetic Insert: Sra1
Vector Backbone Description: Backbone Marker:Promega; Backbone Size:3197; Vector Backbone:pGEM-3Zf(+); Vector Types:in vitro transcription; Bacterial Resistance:Ampicillin
Defining Citation: PMID:41291101
Proper citation: RRID:Addgene_232033 Copy
Species: Mus musculus
Genetic Insert: Sra1
Vector Backbone Description: Backbone Marker:Promega; Backbone Size:2997; Vector Backbone:pGEM-7Zf(+); Vector Types:in vitro transcription; Bacterial Resistance:Ampicillin
Defining Citation: PMID:41291101
Proper citation: RRID:Addgene_232032 Copy
Species: Mus musculus
Genetic Insert: Tdg
Vector Backbone Description: Backbone Size:6112; Vector Backbone:MCS-BioID2-HA; Vector Types:Mammalian Expression; Bacterial Resistance:Ampicillin
Defining Citation: PMID:41291101
Proper citation: RRID:Addgene_232030 Copy
Species: Aegilops sharonensis
Genetic Insert: Sr62NLRa
Vector Backbone Description: Backbone Marker:Zhao and Zhou 2020, doi: https://doi.org/10.11983/CBB19229; Backbone Size:10935; Vector Backbone:pCambia1300-cLUC; Vector Types:Plant Expression; Bacterial Resistance:Kanamycin
Defining Citation: PMID:40146821
Comments: Please visit https://doi.org/10.1101/2024.08.30.610287 for bioRxiv preprint.
Proper citation: RRID:Addgene_233526 Copy
Species: Homo sapiens
Genetic Insert: dead CRISPR/Cas9 K1151TAG, MbPylRS
Vector Backbone Description: Vector Backbone:pAAVS1; Vector Types:Mammalian Expression, CRISPR; Bacterial Resistance:Ampicillin
Defining Citation: PMID:41037631
Comments: Please note: This plasmid contains a Q285K mutation in Cas9. This mutation is not expected to impact plasmid function.
Proper citation: RRID:Addgene_248695 Copy
Species: APOBEC-1 (rat), RAD51 ssDNA DBD (L. major), Cas9 (S. pyogenes), UGI (B. subtilis bacteriophage)
Genetic Insert: hyBE4max (CBE); Cas12a (Acidaminococcus sp. BV3L6)-P2A-T7 RNAP
Vector Backbone Description: Backbone Size:2460; Vector Backbone:pUC19; Vector Types:CRISPR; Bacterial Resistance:Ampicillin
Defining Citation: PMID:39991929
Proper citation: RRID:Addgene_236782 Copy
Species: Lachnospiraceae bacterium
Genetic Insert: HyperdLbCas12a
Vector Backbone Description: Vector Backbone:pHAGE-EF1a-IRES-puro; Vector Types:Lentiviral, CRISPR; Bacterial Resistance:Ampicillin
Defining Citation: PMID:38965442
Proper citation: RRID:Addgene_236385 Copy
Species: E. coli
Genetic Insert: atpA
Vector Backbone Description: Backbone Marker:TakaraBio; Backbone Size:9138; Vector Backbone:pLVX-TetOne-bsd; Vector Types:Mammalian Expression, Lentiviral; Bacterial Resistance:Ampicillin
Defining Citation: PMID:40894546
Comments: Please visit https://doi.org/10.1101/2025.08.12.670003 for bioRxiv preprint.
Proper citation: RRID:Addgene_248065 Copy
Species: Synthetic
Genetic Insert: EMCV IRES
Vector Backbone Description: Backbone Marker:Invitrogen; Vector Backbone:pRSET-B; Vector Types:Synthetic Biology, mRNA preparation; Bacterial Resistance:Ampicillin
Defining Citation: PMID:41102175
Proper citation: RRID:Addgene_216151 Copy
Species: Arabidopsis thaliana
Genetic Insert: ALS
Vector Backbone Description: Vector Backbone:EML8357_pA3A-CBECas9; Vector Types:Plant Expression, CRISPR; Bacterial Resistance:Kanamycin
Defining Citation: PMID:41321035
Proper citation: RRID:Addgene_234353 Copy
Genetic Insert: DD-N, TagBFP, QtSig
Vector Backbone Description: Vector Backbone:pcDNA_Zeo; Vector Types:Mammalian Expression; Bacterial Resistance:Ampicillin
Defining Citation: PMID:41261217
Proper citation: RRID:Addgene_236776 Copy
Vector Backbone Description: Vector Backbone:p15A; Vector Types:; Bacterial Resistance:Kanamycin
Defining Citation: PMID:41321035
Proper citation: RRID:Addgene_237864 Copy
Genetic Insert: DD-N-nLuc-QtSig
Vector Backbone Description: Vector Backbone:pcDNA_Zeo; Vector Types:Mammalian Expression; Bacterial Resistance:Ampicillin
Defining Citation: PMID:41261217
Proper citation: RRID:Addgene_236777 Copy
Species: Agrobacterium fabrum str. C58
Genetic Insert: tufA
Vector Backbone Description: Vector Backbone:EML8543_pEML41003; Vector Types:; Bacterial Resistance:Kanamycin
Defining Citation: PMID:41321035
Proper citation: RRID:Addgene_237865 Copy
Species: Homo sapiens
Genetic Insert: Caspase 3
Vector Backbone Description: Backbone Marker:Vector Builder; Backbone Size:4986; Vector Backbone:pAAV[Exp]:WPRE; Vector Types:Mammalian Expression; Bacterial Resistance:Ampicillin
Comments: This AAV construct expresses taCaspase-3 and T2A linked TEVp using the design of Dr. Nirao Shah for caspase mediated cell ablation (Yang et al. 2013 Cell. https://doi.org/10.1016/j.cell.2013.04.017. PubMed 23663785) and an intersectional strategy for Cre-off and Flp-on expression.
Note that the Intersect strategy used here does not make use of "introns" as initially designed by the Deisseroth lab (Fenno et al. 2014 Nat Methods. https://doi.org/10.1038/nmeth.2996. PubMed 24908100). Rather it uses loxP sites in the same orientation to facilitate a Cre-mediated deletion for "off" and inverted FRT sites to facilitate a Flp-mediated inversion for "on".
Proper citation: RRID:Addgene_242456 Copy
Species: Synthetic
Genetic Insert: mCerulean
Vector Backbone Description: Vector Backbone:pET 29b (+); Vector Types:Bacterial Expression; Bacterial Resistance:Kanamycin
Defining Citation: PMID:41068299
Comments: MGSS-mCerulean-GGS(x3)-TEVc-GGS(x3)-SpyTag003-GGS(x3)-6xHis
Proper citation: RRID:Addgene_243787 Copy
Species: Homo sapiens
Genetic Insert: Platelet-derived growth factor subunit A
Vector Backbone Description: Backbone Size:4733; Vector Backbone:pEGFP-N1; Vector Types:Mammalian Expression; Bacterial Resistance:Kanamycin
Defining Citation: PMID:41576950
Proper citation: RRID:Addgene_242343 Copy
Species: Homo sapiens
Genetic Insert: UBC
Vector Backbone Description: Backbone Size:7772; Vector Backbone:pLCKO; Vector Types:Mammalian Expression, Lentiviral; Bacterial Resistance:Ampicillin
Defining Citation: PMID:41286136
Comments: Please visit https://doi.org/10.1101/2024.10.07.617049 for bioRxiv preprint.
Proper citation: RRID:Addgene_242462 Copy
Species: Mus musculus
Genetic Insert: iATPSnFR2.A95A.A119L.mCherry
Vector Backbone Description: Vector Backbone:pAAV; Vector Types:AAV; Bacterial Resistance:Ampicillin
Defining Citation: PMID:38748581
Proper citation: RRID:Addgene_244920 Copy
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