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Species: Homo sapiens
Genetic Insert: SUCNR1
Vector Backbone Description: Vector Backbone:pcDNA 3.1 (+); Vector Types:Mammalian Expression; Bacterial Resistance:Ampicillin
Defining Citation: PMID:37134173
Comments: Class: A, Family: Succinate. Ensembl ID: ENSG00000198829, Uniprot ID: Q9BXA5
Proper citation: RRID:Addgene_213381 Copy
Species: Homo sapiens
Genetic Insert: TDP-43
Vector Backbone Description: Vector Backbone:pAG416-GAL-ccdb; Vector Types:Yeast Expression; Bacterial Resistance:Ampicillin
Proper citation: RRID:Addgene_181719 Copy
Species: Homo sapiens
Genetic Insert: TAAR8
Vector Backbone Description: Vector Backbone:pcDNA 3.1 (+); Vector Types:Mammalian Expression; Bacterial Resistance:Ampicillin
Defining Citation: PMID:37134173
Comments: Class: A, Family: Orphan. Ensembl ID: ENSG00000146385, Uniprot ID: Q969N4
Proper citation: RRID:Addgene_213383 Copy
Species: Homo sapiens
Genetic Insert: TAAR9
Vector Backbone Description: Vector Backbone:pcDNA 3.1 (+); Vector Types:Mammalian Expression; Bacterial Resistance:Ampicillin
Defining Citation: PMID:37134173
Comments: Class: A, Family: Orphan. Ensembl ID: ENSG00000237110, Uniprot ID: Q96RI9
Proper citation: RRID:Addgene_213384 Copy
Species: Homo sapiens
Genetic Insert: FUS
Vector Backbone Description: Vector Backbone:pAG416-GAL-ccdb; Vector Types:Yeast Expression; Bacterial Resistance:Ampicillin
Proper citation: RRID:Addgene_181717 Copy
Species: Homo sapiens
Genetic Insert: FUS
Vector Backbone Description: Vector Backbone:pAG416-GAL-ccdb; Vector Types:Yeast Expression; Bacterial Resistance:Ampicillin
Proper citation: RRID:Addgene_181716 Copy
Species: Methanosarcina barkeri
Genetic Insert: M. barkeri pyrrolysyl-tRNA synthetase
Vector Backbone Description: Backbone Size:3077; Vector Backbone:pIDT-Smart-CMV; Vector Types:Mammalian Expression; Bacterial Resistance:Kanamycin
Defining Citation: PMID:36550276
Proper citation: RRID:Addgene_217361 Copy
Species: Homo sapiens
Genetic Insert: TET inducible EGFP-LC3B
Vector Backbone Description: Vector Backbone:AAVS1-TRE3G-EGFP (Plasmid #52343); Vector Types:Mammalian Expression; Bacterial Resistance:Ampicillin
Defining Citation: PMID:37115157
Proper citation: RRID:Addgene_207551 Copy
Species: Other
Genetic Insert: sgRNA-RL69 with TTCT stretch
Vector Backbone Description: Vector Backbone:pSuper.retro.puro; Vector Types:Mammalian Expression, Retroviral; Bacterial Resistance:Ampicillin
Defining Citation: PMID:28177825
Proper citation: RRID:Addgene_215854 Copy
Species: Other
Genetic Insert: sgRNA-RL69 with TCTT stretch
Vector Backbone Description: Vector Backbone:pSuper.retro.puro; Vector Types:Mammalian Expression, Retroviral; Bacterial Resistance:Ampicillin
Defining Citation: PMID:28177825
Proper citation: RRID:Addgene_215853 Copy
Species: Other
Genetic Insert: sgRNA-EGFP12 with TTTT stretch
Vector Backbone Description: Vector Backbone:pSuper.retro.puro; Vector Types:Mammalian Expression, Retroviral; Bacterial Resistance:Ampicillin
Defining Citation: PMID:28177825
Proper citation: RRID:Addgene_215856 Copy
Species: Catharanthus roseus var. LBE
Genetic Insert: CrGLK fragment
Vector Backbone Description: Backbone Marker:Liu et al., 2002 (doi: 10.1046/j.1365-313x.2002.01394.x); Vector Backbone:pTRV2-GATEWAY; Vector Types:Plant Expression, RNAi; Bacterial Resistance:Kanamycin
Defining Citation: PMID:38743349
Proper citation: RRID:Addgene_203888 Copy
Species: Catharanthus roseus var. LBE
Genetic Insert: CHLH fragment
Vector Backbone Description: Backbone Marker:Liu et al., 2002 (doi: 10.1046/j.1365-313x.2002.01394.x); Vector Backbone:pTRV2-GATEWAY; Vector Types:Plant Expression, RNAi; Bacterial Resistance:Kanamycin
Defining Citation: PMID:38743349
Proper citation: RRID:Addgene_203886 Copy
Species: Synthetic
Genetic Insert: Gal4DBD-miniVPR
Vector Backbone Description: Backbone Marker:inhouse; Vector Backbone:pLV-TET2Puro (Gateway); Vector Types:Mammalian Expression, Lentiviral, Synthetic Biology; Bacterial Resistance:Ampicillin
Comments: The Bersten Lab uses DH5alpha cells for transformation. Plasmid can be grown in NEB Stable but this is not required as this Lenti backbone is observed to be very stable. Please visit https://doi.org/10.1101/2023.11.21.568191 for bioRxiv preprint.
Proper citation: RRID:Addgene_207169 Copy
Species: Synthetic
Genetic Insert: RpoH sensing construct
Vector Backbone Description: Backbone Marker:GeneArt® Gene Synthesis, ThermoFisher Scientific and IDT Inc.; Backbone Size:4531; Vector Backbone:pMK-RQ; Vector Types:Bacterial Expression; Bacterial Resistance:Kanamycin
Defining Citation: PMID:37604827
Comments: The submitted plasmid version has additional 111 bp (1181-1291 bp) in the plasmid backbone compared to the version in the publication. The deposited plasmid has been tested and experimentally validated entailing no impact on the biosensor function.
Proper citation: RRID:Addgene_207841 Copy
Species: Homo sapiens
Genetic Insert: Gal4DBD-HIF1a-CAD Myc tag linker
Vector Backbone Description: Vector Backbone:pEF-IRES-Puro; Vector Types:Mammalian Expression; Bacterial Resistance:Ampicillin
Comments: Please visit https://doi.org/10.1101/2023.11.21.568191 for bioRxiv preprint.
Proper citation: RRID:Addgene_207171 Copy
Genetic Insert: Empty
Vector Backbone Description: Backbone Marker:inhouse; Vector Backbone:pLV; Vector Types:Mammalian Expression, Lentiviral; Bacterial Resistance:Ampicillin
Comments: Please visit https://doi.org/10.1101/2023.11.21.568191 for bioRxiv preprint.
Proper citation: RRID:Addgene_207176 Copy
Genetic Insert: Empty
Vector Backbone Description: Backbone Marker:inhouse; Vector Backbone:pLV; Vector Types:Mammalian Expression, Lentiviral; Bacterial Resistance:Ampicillin
Comments: Please visit https://doi.org/10.1101/2023.11.21.568191 for bioRxiv preprint.
Proper citation: RRID:Addgene_207175 Copy
Species: Homo sapiens
Genetic Insert: G beta subunit 5
Vector Backbone Description: Vector Backbone:pLenti puro; Vector Types:Mammalian Expression, Lentiviral; Bacterial Resistance:Ampicillin
Defining Citation: PMID:37852256
Proper citation: RRID:Addgene_218177 Copy
Species: Catharanthus roseus var. LBE
Genetic Insert: 16OMT promoter and 5'UTR
Vector Backbone Description: Backbone Marker:Weber et al., 2011 (DOI:10.1371/journal.pone.0016765); Vector Backbone:pICH41295; Vector Types:Plant Expression; Bacterial Resistance:Spectinomycin
Defining Citation: PMID:38743349
Proper citation: RRID:Addgene_203890 Copy
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