Searching the RRID Resource Information Network
Are you sure you want to leave this community? Leaving the community will revoke any permissions you have been granted in this community.
Magdalena Julkowska, Like Fokkens 2018. PlotDivergence for plotting the natural variation in sequence identity of the chosen genetic locus encompassing multiple ORFs. protocols.io https://dx.doi.org/10.17504/protocols.io.t2ieqceCopy Citation Copied
URL: https://dx.doi.org/DOI:10.17504/protocols.io.t2ieqce
Authors: Magdalena Julkowska, Like Fokkens
Group: Salt Lab KAUST
Summary: This in silico protocol allows to have an insight into the sequence divergence of selected genomic region, including missing information, gaps and allignment with Open Reading Frames. The protocol is written for model plant Arabidopsis thaliana, but can be possibly adapted to plotting the divergence of any organism, for which multiple accessions were resequenced. We used this script to produce divergence plots in our paperMagdalena M. Julkowska, Karlijn Klei, Like Fokkens, Michel A. Haring, M. Eric Schranz, Christa Testerink; Natural variation in rosette size under salt stress conditions corresponds to developmental differences between Arabidopsis accessions and allelic variation in theLRR-KISSgene,Journal of Experimental Botany, Volume 67, Issue 8, 1 April 2016, Pages 2127–2138,https://doi.org/10.1093/jxb/erw015
Affiliations: King Abdullah University of Science and Technology, University of Amsterdam
Version: 1
Publication Date: 2018
Expand AllComing soon.
Check
for resource mentions.
Coming soon.
Source:
The NIDDK Information Network (dkNET) serves the needs of basic and clinical investigators by providing seamless access to large pools of data and research resources relevant to the mission of The National Institute of Diabetes Digestive and Kidney Diseases (NIDDK). dkNET is hosted at University of California San Diego, and is supported by NIH NIDDK grant U24DK097771.
Email: info_at_ dknet.org
