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HANNIGAN GD, GRICE EA, ET AL. 2016. Script R14: CARD Antibiotic Resistance Analysis. protocols.io https://dx.doi.org/10.17504/protocols.io.ejnbcmeCopy Citation Copied
URL: https://dx.doi.org/DOI:10.17504/protocols.io.ejnbcme
Authors: HANNIGAN GD, GRICE EA, ET AL.
Group: VERVE Net, Club Grice
Summary: This protocol outlines our analysis of the potential antibiotic resistance genes found within the skin virome. We start by visualizing the relative abundances of the top 10 antibiotic resistance categories (according to the CARD). We then quantify the number of unique antibiotic resistance gene categories annotated in the samples at each skin site, and also look at the percent CARD annotated ORFs of the overall ORFs present in each sample at each skin site.
Associated Publications: Kindler L, Stoliartchouk A, Teytelman L, Hurwitz BL, Method-centered digital communities on protocols.io for fast-paced scientific innovation. F1000Research doi: 10.12688/f1000research.9453.2
Affiliations: DEPARTMENT OF DERMATOLOGY UNIVERSITY OF PENNSYLVANIA, DEPARTMENT OF DERMATOLOGY UNIVERSITY OF PENNSYLVANIA, DEPARTMENT OF DERMATOLOGY UNIVERSITY OF PENNSYLVANIA
External URL: http://mbio.asm.org/content/6/5/e01578-15.full
Version: 1
Publication Date: 2016
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