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Curtis Huttenhower 2016. bioBakery Protocols. protocols.io https://dx.doi.org/10.17504/protocols.io.d9899vCopy Citation Copied
URL: https://dx.doi.org/DOI:10.17504/protocols.io.d9899v
Authors: Curtis Huttenhower
Group: VERVE Net, Huttenhower Lab
Summary: This tutorial focuses on performing a comprehensive metagenomic analysis from whole-genome shotgun sequencing data for microbiome studies. It is divided in to different steps that use the following metagenomic, computational tools: MetaPhlAn, GraPhlAn, LEfSe, and HUMAnN. Our last addition to the PhlAn tools is PhyloPhlAn that can be used in metagenomics for phylgenetically and taxonomically place contigs assembled from whole metagenomic sequencing samples.This tutorial is also a step-by-step description of the metagenomic pipeline we used in our review paper about computational meta'omics (specifically Figure 4).
Version: 1
Publication Date: 2016
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The NIDDK Information Network (dkNET) serves the needs of basic and clinical investigators by providing seamless access to large pools of data and research resources relevant to the mission of The National Institute of Diabetes Digestive and Kidney Diseases (NIDDK). dkNET is hosted at University of California San Diego, and is supported by NIH NIDDK grant U24DK097771.
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