Searching the RRID Resource Information Network
Are you sure you want to leave this community? Leaving the community will revoke any permissions you have been granted in this community.
Afiahayati, Sato K, Namiki T, Hachiya T, Tanaka H, Sakakibara Y. 2016. Use Bambus2 scaffolding module. protocols.io https://dx.doi.org/10.17504/protocols.io.d7n9mdCopy Citation Copied
URL: https://dx.doi.org/DOI:10.17504/protocols.io.d7n9md
Authors: Afiahayati, Sato K, Namiki T, Hachiya T, Tanaka H, Sakakibara Y.
Group: VERVE Net, Hurwitz Lab
Summary: Bambus2 is a scaffolding module that can be applicable to metagenomics settings. MetaVelvet uses a novel graph splitting algorithm during contiging process, and uses the scaffolding module of Velvet (RockBand and Pebble) during scaffolding process. Alternatively, users can output MetaVelvet contigs and uses Bambus2 scaffolding module instead of using RockBand and Pebble.
Affiliations: Sakakibara Lab, Sakakibara Lab, Sakakibara Lab, Sakakibara Lab, Sakakibara Lab, Sakakibara Lab
External URL: http://metavelvet.dna.bio.keio.ac.jp/MV.html
Version: 1
Publication Date: 2016
Expand AllComing soon.
Check
for resource mentions.
Coming soon.
Source:
The NIDDK Information Network (dkNET) serves the needs of basic and clinical investigators by providing seamless access to large pools of data and research resources relevant to the mission of The National Institute of Diabetes Digestive and Kidney Diseases (NIDDK). dkNET is hosted at University of California San Diego, and is supported by NIH NIDDK grant U24DK097771.
Email: info_at_ dknet.org
