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Bonnie Hurwitz 2015. Building an HPC blast pipeline. protocols.io https://dx.doi.org/10.17504/protocols.io.d5a82dCopy Citation Copied
URL: https://dx.doi.org/DOI:10.17504/protocols.io.d5a82d
Authors: Bonnie Hurwitz
Group: Hurwitz Lab, ABE487_HMP, ABE487_EMP
Summary: This tutorial shows you how to create a pipeline on the University of Arizona HPC. Specifically, we will be creating a pipeline to run blast, using scripts you are writing or have already written from ABE 487 weeks 10 and 11. The pipeline will do the following:1. split each of the files from the night/day transcriptome into files with 10,000 sequences each2. run blastp against uniprot_sprot.fasta3. parse the blast results
Affiliations: University of Arizona
Version: 1
Publication Date: 2015
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