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DOI:DOI:10.17504/protocols.io.bptemnje RRID Copied  
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Smruthi  Karthikeyan, Greg Humphrey 2020. Automated high throughput viral concentration from wastewater using the KingFisher Flex platform. protocols.io https://dx.doi.org/10.17504/protocols.io.bptemnje
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URL: https://dx.doi.org/DOI:10.17504/protocols.io.bptemnje

Authors: Smruthi Karthikeyan, Greg Humphrey

Group: Coronavirus Method Development Community

Summary: Large-scale wastewater surveillance has the ability to greatly augment the tracking of infection dynamics especially in communities where the prevalence rates far exceed the testing capacity. However, current methods for viral detection in wastewater are severely lacking in terms of scaling up for high throughput. In the present study, we employed an automated magnetic-bead based concentration approach for viral detection in sewage that can effectively be scaled up for processing 24 samples in a single 40-minute run. The method compared favorably to conventionally used methods for viral wastewater concentrations with a limit of detection of 8.809 viral gene copies/ml from input sample volumes as low as 10ml and can enable the processing of over 100 wastewater samples in a day.

Affiliations: University of California, San Diego, University of California, San Diego

External URL: https://www.medrxiv.org/content/10.1101/2020.11.16.20232900v1

Version: 1

Publication Date: 2020

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