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Frank Aylward 2018. Introduction to read mapping. protocols.io dx.doi.org/10.17504/protocols.io.piadkaeCopy Citation Copied
URL: https://dx.doi.org/10.17504/protocols.io.piadkae
Authors: Frank Aylward
Summary: This is an example of a simple read mapping workflow. It is designed to be performed via the command line on an Ubuntu 16.06 OS. After completing this tutorial you should:1) Have a practical understanding of how read mapping analyses are performed in the command line.2) Understand the basics of how to process SAM and BAM files.3) Be able to calculate depth of coverage of a contig/scaffold/chromosome in a query read dataset.
Affiliations: Virginia Tech
Version: 2
Publication Date: 2018
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Source: Protocols.io
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