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Benjamin Bolduc 2017. Preparing Data for vContact from Proteins (Cyverse). protocols.io dx.doi.org/10.17504/protocols.io.gwdbxa6Copy Citation Copied
URL: https://dx.doi.org/10.17504/protocols.io.gwdbxa6
Authors: Benjamin Bolduc
Group: Sullivan Lab, iVirus
Summary: Preparing data for use in vContact by using VirSorted Ocean Sampling Day (2014) contigs, using tools available in Cyverse. This protocol creates a BLAST DB, BLASTs sequences, and creates a gene-to-contig mapping file. Results from this protocol are suitable for vContact-PCs.
Associated Publications: Bolduc B, Jang HB, Doulcier G, You Z, Roux S, Sullivan MB, vConTACT: an iVirus tool to classify double-stranded DNA viruses that infect and . PeerJ doi: 10.7717/peerj.3243
Affiliations: The Ohio State University
External URL: https://dx.doi.org/10.7717/peerj.3243
Version: 3
Publication Date: 2017
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Source: Protocols.io
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