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Hannigan GD, Grice EA, et al. 2016. Script P1: Pre-Processing Samples. protocols.io https://dx.doi.org/10.17504/protocols.io.edrba56Copy Citation Copied
URL: https://dx.doi.org/DOI:10.17504/protocols.io.edrba56
Authors: Hannigan GD, Grice EA, et al.
Group: VERVE Net, Club Grice
Summary: This protocol provides methods for quality control of metagenomic data. Included is adapter trimming, quality trimming, decontamination, negative control removal, and pre-processing results. Based on the methods found in the following publication:Hannigan, Geoffrey D., et al. "The Human Skin Double-Stranded DNA Virome: Topographical and Temporal Diversity, Genetic Enrichment, and Dynamic Associations with the Host Microbiome." mBio 6.5 (2015): e01578-15.
Associated Publications: Kindler L, Stoliartchouk A, Teytelman L, Hurwitz BL, Method-centered digital communities on protocols.io for fast-paced scientific innovation. F1000Research doi: 10.12688/f1000research.9453.2
Affiliations: Grice Lab, Department of Dermatology University of Pennsylvania, Grice Lab, Department of Dermatology University of Pennsylvania, Grice Lab, Department of Dermatology University of Pennsylvania
External URL: http://mbio.asm.org/content/6/5/e01578-15.full
Version: 1
Publication Date: 2016
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