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URL: https://broadinstitute.github.io/warp/docs/Pipelines/SlideTags_Pipeline/README
Proper Citation: SlideTags.wdl (RRID:SCR_027567)
Description: Software pipeline as open-source, cloud-optimized workflow for processing spatial transcriptomics data. It supports data derived from spatially barcoded sequencing technologies, including Slide-tags-based single-molecule profiling. The pipeline processes raw sequencing data into spatially resolved gene expression matrices, ensuring accurate alignment, spatial positioning, and quantification.
Synonyms: Slide-tags
Resource Type: data analysis software, data processing software, software application, software resource
Keywords: Spatial transcriptomics data, single-cell data, Slide-tags technology data, spatial barcode processing pipeline, spatial gene expression quantification, reads alignment, genome, spatial positioning, human tissue data analysis, 5 alpha-SR2
Availability: Free, Available for download, Freely available
Resource Name: SlideTags.wdl
Resource ID: SCR_027567
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Source: SciCrunch Registry (RRID:SCR_005400)
Description: Interactive portal for finding and submitting biomedical resources. Resources within SciCrunch have assigned RRIDs which are used to cite resources in scientific manuscripts. SciCrunch Registry, formerly NIF Registry, provides resources catalog. Allows to add new resources. Allows edit existing resources after registration. Curators are tasked with identifying and registering resources, examining data, writing configuration files to index and display data and keeping contents current.
URL: https://rrid.site/rin/sources/SCR_005400
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