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URL: https://github.com/xiaoqunwang-lab/Allendigger
Proper Citation: AllenDigger (RRID:SCR_023812)
Description: Software tool for spatial expression data visualization, spatial heterogeneity delineation and single cell registration based on Allen Brain Atlas. Software toolkit to collect and preprocess expression data from Allen Brain Atlas and allow query to visualize spatial distribution of genes of interest, characterize spatial heterogeneity of brain, and register cells from single-cell transcriptomics data to fine anatomical brain regions via machine learning methods with high accuracy.
Resource Type: software toolkit, software resource
Defining Citation: PMID:36926884
Keywords: Allen Mouse Brain Atlas, spatial expression data visualization, spatial heterogeneity delineation, single cell registration, spatial gene expression,
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The NIDDK Information Network (dkNET) serves the needs of basic and clinical investigators by providing seamless access to large pools of data and research resources relevant to the mission of The National Institute of Diabetes Digestive and Kidney Diseases (NIDDK). dkNET is hosted at University of California San Diego, and is supported by NIH NIDDK grant 2U24DK097771-09.
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