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URL: https://broadinstitute.github.io/warp/docs/Pipelines/SlideSeq_Pipeline/README/
Proper Citation: Slide-seq Pipeline (RRID:SCR_023379)
Description: Software pipeline developed in collaboration with BRAIN Initiative Cell Census Network and BRAIN Initiative Cell Atlas Network. Supports processing of spatial transcriptomic data generated with Slide-seq commercialized as Curio Seeker assay.
Synonyms: Slide-seq, slideseq, SlideSeq, SlideSeq Pipeline
Resource Type: data analysis software, data processing software, software application, software resource
Defining Citation: PMID:30923225
Keywords: single cell data, spatial transcriptomics, barcode correction, reads alignment, aligns reads to genome,
Funding: Hertz Graduate Fellowship ; National Science Foundation Graduate Research Fellowship Program ; NIH Early Independence Award ; NIH New Innovator Award ; Schmidt Fellows Program at the Broad Institute
Availability: Free, Available for download, Freely available
Resource Name: Slide-seq Pipeline
Resource ID: SCR_023379
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Source: SciCrunch Registry (RRID:SCR_005400)
Description: Interactive portal for finding and submitting biomedical resources. Resources within SciCrunch have assigned RRIDs which are used to cite resources in scientific manuscripts. SciCrunch Registry, formerly NIF Registry, provides resources catalog. Allows to add new resources. Allows edit existing resources after registration. Curators are tasked with identifying and registering resources, examining data, writing configuration files to index and display data and keeping contents current.
URL: https://rrid.site/rin/sources/SCR_005400
The NIDDK Information Network (dkNET) serves the needs of basic and clinical investigators by providing seamless access to large pools of data and research resources relevant to the mission of The National Institute of Diabetes Digestive and Kidney Diseases (NIDDK). dkNET is hosted at University of California San Diego, and is supported by NIH NIDDK grant U24DK097771.
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