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URL: https://www.bcgsc.ca/resources/software/hlaminer
Proper Citation: HLAminer (RRID:SCR_022282)
Description: Software for HLA predictions from next generation shotgun sequence read data and supports direct read alignment and targeted de novo assembly of sequence reads. Used for identifying HLA alleles directly from shotgun sequence datasets.Supports predictions from variety of DNA sequencing technologies including those from Illumina, MGI, PacBio and Oxford Nanopore.
Resource Type: software resource, software application, simulation software
Defining Citation: PMID:23228053
Keywords: identifying HLA alleles, shotgun sequence datasets, next generation shotgun sequence read data, direct read alignment, targeted de novo assembly, sequence reads
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The NIDDK Information Network (dkNET) serves the needs of basic and clinical investigators by providing seamless access to large pools of data and research resources relevant to the mission of The National Institute of Diabetes Digestive and Kidney Diseases (NIDDK). dkNET is hosted at University of California San Diego, and is supported by NIH NIDDK grant 2U24DK097771-09.
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