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URL: https://github.com/humanlongevity/HLA
Proper Citation: xHLA (RRID:SCR_022277)
Description: Software tool for fast and accurate HLA typing from short read sequence data. Iteratively refines mapping results at amino acid level to achieve four digit typing accuracy for both class I and II HLA genes, taking only 3 min to process 30× whole genome BAM file on desktop computer.
Resource Type: data processing software, software application, software resource
Defining Citation: PMID:28674023
Keywords: HLA typing, short read sequence data, refines mapping results, amino acid level, four digit typing accuracy
Funding: Health Resources and Services Administration ; NCI 5U24CA076518; NHLBI 5U10HL069294; Office of Naval Research Grants
Availability: Free, Available for download, Freely available
Resource Name: xHLA
Resource ID: SCR_022277
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Source: SciCrunch Registry (RRID:SCR_005400)
Description: Interactive portal for finding and submitting biomedical resources. Resources within SciCrunch have assigned RRIDs which are used to cite resources in scientific manuscripts. SciCrunch Registry, formerly NIF Registry, provides resources catalog. Allows to add new resources. Allows edit existing resources after registration. Curators are tasked with identifying and registering resources, examining data, writing configuration files to index and display data and keeping contents current.
URL: https://rrid.site/rin/sources/SCR_005400
The NIDDK Information Network (dkNET) serves the needs of basic and clinical investigators by providing seamless access to large pools of data and research resources relevant to the mission of The National Institute of Diabetes Digestive and Kidney Diseases (NIDDK). dkNET is hosted at University of California San Diego, and is supported by NIH NIDDK grant U24DK097771.
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