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URL: https://github.com/rajewsky-lab/spacemake
Proper Citation: Spacemake (RRID:SCR_022207)
Description: Software pipeline for processing and analysis of large scale spatial transcriptomics data. Enables reproducible data processing from raw sequencing data to automatically generated downstream analysis reports.
Synonyms: spacemake
Resource Type: data analysis software, data processing software, software application, software resource
Defining Citation: DOI:10.1101/2021.11.07.467598
Keywords: spatial dataset, gene counts, large scale spatial transcriptomics data, transcriptomics data, spatial transcriptomics data, raw sequencing data, analysis reports
Availability: Free, Available for download, Freely available
Resource Name: Spacemake
Resource ID: SCR_022207
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Source: SciCrunch Registry (RRID:SCR_005400)
Description: Interactive portal for finding and submitting biomedical resources. Resources within SciCrunch have assigned RRIDs which are used to cite resources in scientific manuscripts. SciCrunch Registry, formerly NIF Registry, provides resources catalog. Allows to add new resources. Allows edit existing resources after registration. Curators are tasked with identifying and registering resources, examining data, writing configuration files to index and display data and keeping contents current.
URL: https://rrid.site/rin/sources/SCR_005400
The NIDDK Information Network (dkNET) serves the needs of basic and clinical investigators by providing seamless access to large pools of data and research resources relevant to the mission of The National Institute of Diabetes Digestive and Kidney Diseases (NIDDK). dkNET is hosted at University of California San Diego, and is supported by NIH NIDDK grant U24DK097771.
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