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Resource Name
cellxgene
RRID:SCR_021059 RRID Copied      
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cellxgene (RRID:SCR_021059)
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Resource Information

URL: https://chanzuckerberg.com/science/programs-resources/single-cell-biology/cellxgene/

Proper Citation: cellxgene (RRID:SCR_021059)

Description: Software tool as interactive explorer for single cell transcriptomics datasets. Used to explore and visualize high dimensional single cell datasets in interactive way. Can visualize gene expression at level of entire dataset or particular subset of cells to help identify cell types, which can in turn help identify diseases. Enables plotting gene expression level against another gene to compare how these different genes are expressed across dataset. Open source cell visualization tool integrates with tools like SciPy and Jupyter.

Resource Type: software resource, data visualization software, software application, data processing software

Keywords: Single cell transcriptomics datasets explorer, gene expression visualization, identify cell types, identify diseases, plotting gene expression level

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This resource

is used by

BICCN

is related to

Allen Institute for Brain Science

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