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URL: http://api.brain-map.org/api/v2/structure_graph_download/1.json
Proper Citation: Allen Mouse Reference Atlas Ontology (RRID:SCR_021000)
Description: Developed for Allen Reference Atlas and follows terminology from Brain Maps: Structure for the Rat Brain (Swanson, 2004, 2018). The ontology has been subsequently extended and revised to also serve as structure ontology for Allen Mouse Common Coordinate Framework.Defines hierarchical partonomy of anatomical structures of adult mouse brain. At top level, brain is divided into gray matter, fiber tracts and ventricular systems. Gray matter is subdivided into cerebrum, brain stem, and cerebellum, which are themselves organized into subregions in hierarchical tree.
Resource Type: data or information resource, controlled vocabulary, ontology
Defining Citation: PMID:32386544
Keywords: structure ontology, brain structure, ontology, hierarchical partonomy, anatomical structures
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