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URL: https://github.com/mlinderm/npsv
Proper Citation: NPSV (RRID:SCR_020984)
Description: Software Python tool for standalone genotyping of deletion and insertion structural variants in short read whole genome sequencing data. Implements machine learning based approach for SV genotyping that employs NGS simulation to model the combined effects of the genomic region, sequencer and alignment pipeline.
Synonyms: Non-Parametric Structural Variant Genotyper, Non-Parametric Structural Variant genotyper
Resource Type: simulation software, software application, software resource
Keywords: WGS data, short read, whole genome sequencing data, standalone genotyping, insertion structural variants, deletion structural variants, structural variants, SV genotyping, NGS simulation
Availability: Free, Available for download, Freely available
Resource Name: NPSV
Resource ID: SCR_020984
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Source: SciCrunch Registry (RRID:SCR_005400)
Description: Interactive portal for finding and submitting biomedical resources. Resources within SciCrunch have assigned RRIDs which are used to cite resources in scientific manuscripts. SciCrunch Registry, formerly NIF Registry, provides resources catalog. Allows to add new resources. Allows edit existing resources after registration. Curators are tasked with identifying and registering resources, examining data, writing configuration files to index and display data and keeping contents current.
URL: https://rrid.site/rin/sources/SCR_005400
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