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URL: https://github.com/hillerlab/GenomeAlignmentTools
Proper Citation: RepeatFiller (RRID:SCR_017414)
Description: Software tool to incorporate newly detected repeat overlapping alignments into pairwise alignment chains. It only aligns local genomic regions that are bounded by colinear aligning blocks, as provided in chains, which makes it feasible to consider all seeds including those that overlap repetitive regions. Used to improve genome alignments by incorporating previously undetected local alignments between repetitive sequences.
Resource Type: alignment software, data processing software, image analysis software, software application, software resource
Defining Citation: DOI:10.1101/696922
Keywords: Repeat, overlapping, alignment, pairwise, chain, local, genomic, region, colinear, block, sequence, undetected, bio.tools
Availability: Free, Freely available
Resource Name: RepeatFiller
Resource ID: SCR_017414
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Max Planck Institute of Molecular Cell Biology and Genetics; Dresden; Germany |
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Source: SciCrunch Registry (RRID:SCR_005400)
Description: Interactive portal for finding and submitting biomedical resources. Resources within SciCrunch have assigned RRIDs which are used to cite resources in scientific manuscripts. SciCrunch Registry, formerly NIF Registry, provides resources catalog. Allows to add new resources. Allows edit existing resources after registration. Curators are tasked with identifying and registering resources, examining data, writing configuration files to index and display data and keeping contents current.
URL: https://rrid.site/rin/sources/SCR_005400
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