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URL: https://github.com/Yandell-Lab/taxonomer_0.5
Proper Citation: Taxonomer (RRID:SCR_014655)
Description: Genome sequence classification tool based on kmer. The code allows users to build nucleotide databases and protein databases, classify reads, construct binner databases, and create taxonomic relationship files. The website provides information on how to perform these actions with code, though users can access a web-based Taxonomer if they need/want to.
Resource Type: data analysis software, data processing software, software application, software resource, source code, web application
Keywords: metagenomics toolkit, metagenomics analysis, analysis tool, microorganism detection, sequencing, genome sequence classification, kmer, nucleotide database, protein database, read classification, binner database, taxonomic relationship, source code, web application
Availability: Free, Available for download, Written in c and python
Resource Name: Taxonomer
Resource ID: SCR_014655
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Source: SciCrunch Registry (RRID:SCR_005400)
Description: Interactive portal for finding and submitting biomedical resources. Resources within SciCrunch have assigned RRIDs which are used to cite resources in scientific manuscripts. SciCrunch Registry, formerly NIF Registry, provides resources catalog. Allows to add new resources. Allows edit existing resources after registration. Curators are tasked with identifying and registering resources, examining data, writing configuration files to index and display data and keeping contents current.
URL: https://rrid.site/rin/sources/SCR_005400
The NIDDK Information Network (dkNET) serves the needs of basic and clinical investigators by providing seamless access to large pools of data and research resources relevant to the mission of The National Institute of Diabetes Digestive and Kidney Diseases (NIDDK). dkNET is hosted at University of California San Diego, and is supported by NIH NIDDK grant U24DK097771.
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