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URL: http://rulai.cshl.edu/tred
Proper Citation: Transcriptional Regulatory Element Database (RRID:SCR_005661)
Description: Collects mammalian cis- and trans-regulatory elements together with experimental evidence. Regulatory elements were mapped on to assembled genomes. Resource for gene regulation and function studies. Users can retrieve primers, search TF target genes, retrieve TF motifs, search Gene Regulatory Networks and orthologs, and make use of sequence analysis tools. Uses databases such as Genbank, EPD and DBTSS, and employ promoter finding program FirstEF combined with mRNA/EST information and cross-species comparisons. Manually curated.
Abbreviations: TRED
Synonyms: Transcriptional Regulatory Element Database
Resource Type: data or information resource, database
Defining Citation: PMID:17202159
Keywords: Mammalian, cis, trans, regulatory, element, mapped, genome, gene, regulation, function, data, FASEB list
Funding: NCI ; NHGRI HG001696
Availability: Free, Freely available
Resource Name: Transcriptional Regulatory Element Database
Resource ID: SCR_005661
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Source: SciCrunch Registry (RRID:SCR_005400)
Description: Interactive portal for finding and submitting biomedical resources. Resources within SciCrunch have assigned RRIDs which are used to cite resources in scientific manuscripts. SciCrunch Registry, formerly NIF Registry, provides resources catalog. Allows to add new resources. Allows edit existing resources after registration. Curators are tasked with identifying and registering resources, examining data, writing configuration files to index and display data and keeping contents current.
URL: https://rrid.site/rin/sources/SCR_005400
The NIDDK Information Network (dkNET) serves the needs of basic and clinical investigators by providing seamless access to large pools of data and research resources relevant to the mission of The National Institute of Diabetes Digestive and Kidney Diseases (NIDDK). dkNET is hosted at University of California San Diego, and is supported by NIH NIDDK grant U24DK097771.
Email: info_at_ dknet.org
