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URL: http://cistrome.org/BETA/
Proper Citation: Binding and Expression Target Analysis (RRID:SCR_005396)
Description: A software package that integrates ChIP-seq of transcription factors or chromatin regulators with differential gene expression data to infer direct target genes. BETA has three functions: (1) to predict whether the factor has activating or repressive function; (2) to infer the factor''''s target genes; and (3) to identify the motif of the factor and its collaborators which might modulate the factor''''s activating or repressive function. BETA requires ~2GB RAM and 1h for the whole procedure. BETA may run on the web server at Cistrome or may be downloaded.
Abbreviations: BETA
Synonyms: BETA - Binding and Expression Target Analysis
Resource Type: analysis service resource, data analysis service, production service resource, service resource, software resource
Defining Citation: PMID:24263090
Keywords: transcription factor, chromatin regulator, transcriptome, chip-seq, cistrome, gene expression, target gene, motif, differential gene expression
Availability: Registration required, Open unspecified license
Resource Name: Binding and Expression Target Analysis
Resource ID: SCR_005396
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Source: SciCrunch Registry (RRID:SCR_005400)
Description: Interactive portal for finding and submitting biomedical resources. Resources within SciCrunch have assigned RRIDs which are used to cite resources in scientific manuscripts. SciCrunch Registry, formerly NIF Registry, provides resources catalog. Allows to add new resources. Allows edit existing resources after registration. Curators are tasked with identifying and registering resources, examining data, writing configuration files to index and display data and keeping contents current.
URL: https://rrid.site/rin/sources/SCR_005400
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