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URL: http://bix.ucsd.edu/projects/singlecell/
Proper Citation: Velvet-SC (RRID:SCR_004377)
Description: Software package for short read data from single cells that improves assembly through use of progressively increasing coverage cutoff. Used for single cell Illumina sequences, allows variable coverage datasets to be utilized with assembly of E. coli and S. aureus single cell reads. Assembles single cell genome of uncultivated SAR324 clade of Deltaproteobacteria.
Abbreviations: Velvet SC
Synonyms: Velvet Single Cell
Resource Type: data analysis software, data processing software, sequence analysis software, software application, software resource
Defining Citation: PMID:21926975
Keywords: genome, single, cell, short, read, assembly
Funding: NCRR P41 RR024851; NHGRI R01 HG003647; Sloan Foundation
Availability: Free, Available for download, Freely available
Resource Name: Velvet-SC
Resource ID: SCR_004377
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Source: SciCrunch Registry (RRID:SCR_005400)
Description: Interactive portal for finding and submitting biomedical resources. Resources within SciCrunch have assigned RRIDs which are used to cite resources in scientific manuscripts. SciCrunch Registry, formerly NIF Registry, provides resources catalog. Allows to add new resources. Allows edit existing resources after registration. Curators are tasked with identifying and registering resources, examining data, writing configuration files to index and display data and keeping contents current.
URL: https://rrid.site/rin/sources/SCR_005400
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