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URL: http://deweylab.biostat.wisc.edu/detonate/
Proper Citation: DETONATE (RRID:SCR_017035)
Description: Software tool to evaluate de novo transcriptome assemblies from RNA-Seq data. Consists of RSEM-EVAL and REF-EVAL packages. RSEM-EVAL is reference-free evaluation method. REF-EVAL is reference based and can be used to compare sets of any kinds of genomic sequences.
Abbreviations: DETONATE
Synonyms: DE novo TranscriptOme rNa-seq Assembly with or without the Truth Evaluation, DETONATE
Resource Type: data analysis software, data processing software, sequence analysis software, software application, software resource
Defining Citation: PMID:25608678
Keywords: evaluate, de novo, transcriptome, assembly, RNAseq, data, RSEM-EVAL, REF-EVAL, dataset, genomic, sequence, bio.tools
Funding: NHGRI R01 HG005232; NLM T15 LM007359
Availability: Free, Available for download, Freely available
Resource Name: DETONATE
Resource ID: SCR_017035
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Source: SciCrunch Registry (RRID:SCR_005400)
Description: Interactive portal for finding and submitting biomedical resources. Resources within SciCrunch have assigned RRIDs which are used to cite resources in scientific manuscripts. SciCrunch Registry, formerly NIF Registry, provides resources catalog. Allows to add new resources. Allows edit existing resources after registration. Curators are tasked with identifying and registering resources, examining data, writing configuration files to index and display data and keeping contents current.
URL: https://rrid.site/rin/sources/SCR_005400
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