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URL: https://services.healthtech.dtu.dk/datasets/OglycBase/
Proper Citation: O-GLYCBASE (RRID:SCR_003288)
Description: Revised database of O- and C-glycosylated proteins. The criteria for inclusion are at least one experimentally verified O- or C-glycosylation site. Each entry contains information about the glycan involved, the species, sequence, a literature reference and http-linked cross-references to other databases. Version 6.00 has 242 glycoprotein entries. The terminal sugar linked to serine or threonine is cited when known. The database is non-redundant in the sense that it contains no identical sequences, unless there is conflicting glycosylation data. Mucins have tandem repeat sequences, which are O-glycosylated. This result in some redundancy of the O-glycosylation sites. For prediction purposes they have also included a version of the database which contains no identical O-glycosylation sites (window=9) called O-Unique.seq. Data can no longer be retrieved by anonymous ftp. Only http is supported. New data, comments and suggestions are welcome.
Abbreviations: O-GlycBase
Resource Type: service resource, database, data or information resource, storage service resource, data repository
Defining Citation: PMID:9847232
Keywords: glycosylated protein, glycoprotein, serine, threonine, o-glycosylation site, c-glycosylation site, carbohydrate, o-glycan, asparagine, glycosylation, glycan
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The NIDDK Information Network (dkNET) serves the needs of basic and clinical investigators by providing seamless access to large pools of data and research resources relevant to the mission of The National Institute of Diabetes Digestive and Kidney Diseases (NIDDK). dkNET is hosted at University of California San Diego, and is supported by NIH NIDDK grant 2U24DK097771-09.
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