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URL: https://code.google.com/p/mosdi/
Proper Citation: MoSDi (RRID:SCR_003037)
Description: Sequence analysis toolkit that contains a lot of sequence analysis algorithms, including methods for 1) motif statistics, e.g. compute the exact occurrence count distribution of a motif, 2) exact motif discovery: extraction of motifs with provably optimal p-value, 3) analysis of pattern matching algorithms: compute (for given algorithm and pattern) the exact distribution of the number of character accesses caused by searching a random text, 4) statistics of fragment masses resulting from proteolytic cleavage of proteins, 5) computing the expectated read length of sequencing reads for a given dispensation order (for 454 or IonTorrent) and 6) analysing sensitivity of spaced alignment seeds.
Synonyms: Motif Statistics and Discovery, Motif Statistics and Discovery - Sequence analysis toolkit for bioinformatics
Resource Type: data processing software, data analysis software, software toolkit, software resource, software application
Defining Citation: PMID:19478010
Keywords: standalone software, unix/linux, motif
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The NIDDK Information Network (dkNET) serves the needs of basic and clinical investigators by providing seamless access to large pools of data and research resources relevant to the mission of The National Institute of Diabetes Digestive and Kidney Diseases (NIDDK). dkNET is hosted at University of California San Diego, and is supported by NIH NIDDK grant 2U24DK097771-09.
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