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URL: http://burgundy.cmmt.ubc.ca/cgi-bin/RAVEN/a?rm=home
Proper Citation: RAVEN (RRID:SCR_001937)
Description: Tool to search for putative regulatory genetic variation in your favorite gene. Single nucleotide polymorphisms (SNPs) (from dbSNP and user defined) are analyzed for overlap with potential transcription factor binding sites (TFBS) and phylogenetic footprinting using UCSC phastCons scores from multiple alignments of 8 vertebrate genomes.
Abbreviations: RAVEN
Synonyms: Regulatory analysis of Variation in Enhancers, RAVEN - Regulatory analysis of Variation in ENhancers
Resource Type: production service resource, data analysis service, service resource, analysis service resource, database, data or information resource
Defining Citation: PMID:18208319
Keywords: transcription factor binding site, phylogenetic footprint, regulatory sequence variation, genetic variation, in silico, regulatory sequence, FASEB list
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The NIDDK Information Network (dkNET) serves the needs of basic and clinical investigators by providing seamless access to large pools of data and research resources relevant to the mission of The National Institute of Diabetes Digestive and Kidney Diseases (NIDDK). dkNET is hosted at University of California San Diego, and is supported by NIH NIDDK grant 2U24DK097771-09.
Email: info_at_ dknet.org
