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URL: http://sun.aei.polsl.pl/kmc/
Proper Citation: KMC (RRID:SCR_001245)
Description: Software utility for counting k-mers (sequences of consecutive k symbols) in a set of reads from genome sequencing projects. It scans the raw reads and produces a compact representation of all non-unique reads accompanied with number of their occurrences. The algorithm implemented makes use mostly of disk space rather than RAM, which allows to use KMC even on rather typical personal computers.
Abbreviations: KMC
Synonyms: KMC - K-mer Counter, K-mer Counter
Resource Type: software resource
Defining Citation: PMID:23679007, DOI:10.1093/bioinformatics/btv022
Keywords: c++, k-mer, genome sequencing, linux, windows, de bruijn graph
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The NIDDK Information Network (dkNET) serves the needs of basic and clinical investigators by providing seamless access to large pools of data and research resources relevant to the mission of The National Institute of Diabetes Digestive and Kidney Diseases (NIDDK). dkNET is hosted at University of California San Diego, and is supported by NIH NIDDK grant 2U24DK097771-09.
Email: info_at_ dknet.org
